Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCV19_RS07005 Genome accession   NZ_AP025463
Coordinates   1515091..1516515 (-) Length   474 a.a.
NCBI ID   WP_065676921.1    Uniprot ID   A0A1C3JGH3
Organism   Vibrio celticus strain CECT 7224     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1510091..1521515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS06980 - 1510715..1511368 (+) 654 WP_065676924.1 thiopurine S-methyltransferase -
  OCV19_RS06985 purT 1511497..1512672 (-) 1176 WP_065676923.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OCV19_RS06990 cdd 1512840..1513727 (-) 888 WP_065676922.1 cytidine deaminase -
  OCV19_RS06995 - 1514014..1514691 (-) 678 WP_012604141.1 LrgB family protein -
  OCV19_RS07000 - 1514694..1515065 (-) 372 WP_041472826.1 CidA/LrgA family protein -
  OCV19_RS07005 sbcB 1515091..1516515 (-) 1425 WP_065676921.1 exodeoxyribonuclease I Machinery gene
  OCV19_RS07010 - 1516722..1517570 (-) 849 WP_065676920.1 sterol desaturase family protein -
  OCV19_RS07015 - 1517658..1518671 (-) 1014 WP_065676919.1 DUF2804 domain-containing protein -
  OCV19_RS07020 - 1518842..1519876 (+) 1035 WP_065676918.1 AraC family transcriptional regulator -
  OCV19_RS07025 - 1519881..1520831 (-) 951 WP_065676972.1 chromosome partitioning protein ParA -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54706.98 Da        Isoelectric Point: 4.8199

>NTDB_id=91700 OCV19_RS07005 WP_065676921.1 1515091..1516515(-) (sbcB) [Vibrio celticus strain CECT 7224]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWNWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELSEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=91700 OCV19_RS07005 WP_065676921.1 1515091..1516515(-) (sbcB) [Vibrio celticus strain CECT 7224]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTCCCTGCGCCTGAAGCTGCGTTGATCACCCGTATCACACCACAGAAAGCGGCTTCACAAGGTCTCCCTGAGCCA
GAGTTTATCGCTAAGATCCATGCTGAGTTGGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATCCGATTCGATGA
TGAAGTAACGCGTTACACCTGTTACCGAAATTTCATTGACCCATATGCGTGGAACTGGCAGAACGGCAACTCACGTTGGG
ATCTATTAGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGTTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACACGAGAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCAAAGAAGCTTAAAGCTGCACAACCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTAAATGACCTAGTTGATATCGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGCTGGATTGTGCCTATGGCTTGGCACCCAACTAATCAAAATGCGGTTATCGTGGTTGATTTAGCTAAAGATCCAAG
CCCACTACTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGAGTGAAGACGAGCTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGCCAACAATGCTTGAAGAACTTGGCACTGCTGCGCGAACATCCAGAGATCCGCGAAAAACTCAT
TGGCCTGTACTCTCAAGAGCGCGAGTACGAAAAGAGTGATGATGTTGATACCCACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAACAGCGATGAACATCATTCGTGAAACTGACCCGAACAACTTGGCAGCTTTGGATATCACCTTCAGTGACGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCACGTAACTTCCCATGGACGCTCGACGAAGCTGAGCAATTGAAATGGGC
AAACCATTGTCGTGAGTTTTATGAGTGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCACGAACATGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3JGH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

76.321

99.789

0.762

Multiple sequence alignment