Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QZD84_RS19310 Genome accession   NZ_CP141291
Coordinates   743154..744335 (-) Length   393 a.a.
NCBI ID   WP_029844629.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 738154..749335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS19295 - 739457..740005 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  QZD84_RS19300 - 740091..740708 (-) 618 WP_025515995.1 HAD family phosphatase -
  QZD84_RS19305 cqsS 741028..743076 (+) 2049 WP_024701329.1 hybrid sensor histidine kinase/response regulator Regulator
  QZD84_RS19310 cqsA 743154..744335 (-) 1182 WP_029844629.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QZD84_RS19315 ylqF 744690..745634 (-) 945 WP_017448150.1 ribosome biogenesis GTPase YlqF -
  QZD84_RS19320 - 746327..747181 (-) 855 WP_025795678.1 LysR family transcriptional regulator -
  QZD84_RS19325 - 747288..748310 (-) 1023 WP_338429172.1 hypothetical protein -
  QZD84_RS19330 - 748296..749012 (-) 717 Protein_665 sulfatase-like hydrolase/transferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43780.17 Da        Isoelectric Point: 6.7297

>NTDB_id=916998 QZD84_RS19310 WP_029844629.1 743154..744335(-) (cqsA) [Vibrio parahaemolyticus strain BM26A]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFKIRSESQ
IIALECGSERNTERVRDFLEERGVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=916998 QZD84_RS19310 WP_029844629.1 743154..744335(-) (cqsA) [Vibrio parahaemolyticus strain BM26A]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAGCCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTCGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAAAATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAATTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.915

98.473

0.58