Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV19_RS06945 Genome accession   NZ_AP025463
Coordinates   1503419..1504600 (-) Length   393 a.a.
NCBI ID   WP_065676929.1    Uniprot ID   -
Organism   Vibrio celticus strain CECT 7224     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498419..1509600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS06930 - 1498938..1499837 (+) 900 WP_065676932.1 Vmh family MBL fold metallo-hydrolase -
  OCV19_RS06935 - 1500148..1500963 (+) 816 WP_065676931.1 TauD/TfdA family dioxygenase -
  OCV19_RS06940 - 1501220..1503268 (+) 2049 WP_065676930.1 response regulator -
  OCV19_RS06945 cqsA 1503419..1504600 (-) 1182 WP_065676929.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV19_RS06950 - 1504869..1506251 (-) 1383 WP_065676928.1 PLP-dependent aminotransferase family protein -
  OCV19_RS06955 - 1506355..1507251 (+) 897 WP_065676927.1 EamA family transporter -
  OCV19_RS06960 - 1507369..1507509 (-) 141 Protein_1316 GTP-binding protein -
  OCV19_RS06965 ihfA 1507956..1508252 (+) 297 WP_004734853.1 integration host factor subunit alpha -
  OCV19_RS06970 - 1508425..1509420 (-) 996 WP_065676926.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43800.98 Da        Isoelectric Point: 6.6607

>NTDB_id=91699 OCV19_RS06945 WP_065676929.1 1503419..1504600(-) (cqsA) [Vibrio celticus strain CECT 7224]
MSDKTKNKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPQRNSVVMQSNDYLALSHNKQIQQAHQAAICEHDDNVVMS
AIFLQDDQSKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPGTPVYIDFLAHMSLWEGIRAAGALAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVQALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSKTLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKREALFNRAKSLTTGLKRIGFNIRSESQ
IVALECGNERNTERVRDFLEERVVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=91699 OCV19_RS06945 WP_065676929.1 1503419..1504600(-) (cqsA) [Vibrio celticus strain CECT 7224]
ATGAGTGATAAAACAAAAAACAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTGATTAC
CCAGAACCAAAGCCAGAAGCATTTAGTATTGGGTAAACGCCCCCAGCGTAATTCCGTTGTGATGCAGAGCAATGATTACT
TAGCGCTGTCACACAACAAACAGATCCAACAAGCCCATCAAGCGGCGATCTGTGAGCACGATGACAACGTGGTGATGTCT
GCCATTTTCTTACAAGATGATCAGTCTAAACCTGCGTTCGAAACTGAGCTTGCGAACTATGTTGGAATGGAGAGCTGTTT
GCTTTCTCAATCGGGCTGGGCGGCCAATATTGGGCTATTGCAAACCATCTGCCCACCGGGCACACCTGTTTATATTGATT
TCCTTGCACACATGTCGCTATGGGAAGGGATTCGCGCTGCCGGCGCCCTCGCCCACCCGTTTATGCATAACAATATGAAT
CACCTACGCAAACAGTTAGAGCGCCACGGCTCAGGCGTCATTGTTGTCGACTCGGTATACAGCACAATCGGCACCATTGC
CCCACTGCGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCGGTCGTCGTTGATGAATCCCATTCACTGGGTACAC
ATGGAGAAAATGGTGCAGGCTTAGTGCAAGCATTGGGGCTCACCAACCAAGTCGACTTCATCACCGTTAGCTTGGCAAAA
ACCTTTGCTTACCGCGCTGGGGCAATCCTTGGCCCTAAACAACTCTCTAAAACCTTGCCGTTTGTGGCGTACCCTGCGAT
TTTTAGCTCGACAGTGTTACCACAAGAAGTGGTTCGTTTAGAAAAAACGTTAGAGGTGATCAAAGGTGCGGAAGACAAAC
GAGAAGCCTTATTCAATCGGGCAAAATCGCTGACTACGGGGCTAAAGCGAATTGGCTTTAATATCCGCAGTGAGTCTCAA
ATTGTAGCGCTAGAGTGCGGCAATGAAAGAAACACGGAGCGTGTGCGTGACTTCTTAGAAGAACGTGTTGTGTTCGGTGC
GGTTTTCTGCCGCCCTGCCACTGGCAAGAACAAAAACATCATCCGTTTTTCAGTGAATGCCGACATGACGCCAAGAGACA
TTGACCATGTGCTCACGGTTTGTCACGAAGCGTACCATCACCCCGAGTTAGAGTTCGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55

Multiple sequence alignment