Detailed information NTG0916984

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QZD84_RS13695
• Genome accession: NZ_CP141290
• Coordinates: 2908461..2909450 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain BM26A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2903461..2914450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZD84_RS13680	recA	2904010..2905053 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
QZD84_RS13685	pncC	2905253..2905735 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
QZD84_RS13690	mutS	2905820..2908381 (+)	2562	WP_025546664.1	DNA mismatch repair protein MutS	-
QZD84_RS13695	rpoS	2908461..2909450 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
QZD84_RS13700	-	2909531..2910454 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
QZD84_RS13705	-	2910469..2911095 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QZD84_RS13710	surE	2911095..2911871 (-)	777	WP_025536693.1	5'/3'-nucleotidase SurE	-
QZD84_RS13715	truD	2911871..2912914 (-)	1044	WP_025552420.1	tRNA pseudouridine(13) synthase TruD	-
QZD84_RS13720	ispF	2912961..2913437 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QZD84_RS13725	ispD	2913455..2914159 (-)	705	WP_025442246.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QZD84_RS13730	ftsB	2914161..2914442 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=916984 QZD84_RS13695 WP_005478537.1 2908461..2909450(-) (rpoS) [Vibrio parahaemolyticus strain BM26A]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=916984 QZD84_RS13695 WP_005478537.1 2908461..2909450(-) (rpoS) [Vibrio parahaemolyticus strain BM26A]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAC
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851