Detailed information NTG0916983

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB0U09_RS16455
• Genome accession: NZ_CP160108
• Coordinates: 3420411..3421403 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 729_141114_1_15
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3415411..3426403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0U09_RS16435	ygbM	3416049..3416825 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
AB0U09_RS16440	ygbN	3416914..3418278 (+)	1365	WP_000104433.1	GntP family transporter	-
AB0U09_RS16445	-	3418421..3419464 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
AB0U09_RS16450	-	3419689..3420240 (+)	552	WP_001179444.1	flavodoxin family protein	-
AB0U09_RS16455	rpoS	3420411..3421403 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB0U09_RS16460	nlpD	3421466..3422560 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
AB0U09_RS16465	pcm	3422745..3423371 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AB0U09_RS16470	surE	3423365..3424126 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB0U09_RS16475	truD	3424107..3425156 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
AB0U09_RS16480	ispF	3425153..3425632 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB0U09_RS16485	ispD	3425632..3426342 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=916983 AB0U09_RS16455 WP_000081550.1 3420411..3421403(-) (rpoS) [Escherichia coli strain 729_141114_1_15]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=916983 AB0U09_RS16455 WP_000081550.1 3420411..3421403(-) (rpoS) [Escherichia coli strain 729_141114_1_15]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715