Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QZD84_RS13565 Genome accession   NZ_CP141290
Coordinates   2886349..2886867 (-) Length   172 a.a.
NCBI ID   WP_308386332.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2881349..2891867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS13540 rimM 2881457..2882005 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  QZD84_RS13545 rpsP 2882034..2882282 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  QZD84_RS13550 ffh 2882492..2883874 (-) 1383 WP_005462555.1 signal recognition particle protein -
  QZD84_RS13555 - 2884087..2884881 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  QZD84_RS13560 - 2885007..2886287 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  QZD84_RS13565 luxS 2886349..2886867 (-) 519 WP_308386332.1 S-ribosylhomocysteine lyase Regulator
  QZD84_RS13570 - 2886934..2887539 (-) 606 WP_015297256.1 hypothetical protein -
  QZD84_RS13575 gshA 2887564..2889132 (-) 1569 WP_308386331.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19061.79 Da        Isoelectric Point: 4.7134

>NTDB_id=916981 QZD84_RS13565 WP_308386332.1 2886349..2886867(-) (luxS) [Vibrio parahaemolyticus strain BM26A]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVVDAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=916981 QZD84_RS13565 WP_308386332.1 2886349..2886867(-) (luxS) [Vibrio parahaemolyticus strain BM26A]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCTAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGTACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGTAGACGCATGGCTCGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878