Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QZD84_RS08080 Genome accession   NZ_CP141290
Coordinates   1748948..1750492 (-) Length   514 a.a.
NCBI ID   WP_203528884.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1743948..1755492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS08060 - 1743962..1745392 (-) 1431 WP_203528867.1 lipopolysaccharide biosynthesis protein -
  QZD84_RS08065 - 1745385..1746557 (-) 1173 WP_025520516.1 glycosyltransferase family 4 protein -
  QZD84_RS08070 - 1746568..1747752 (-) 1185 WP_203528872.1 glycosyltransferase -
  QZD84_RS08075 - 1747903..1748973 (-) 1071 WP_203528874.1 glycosyltransferase -
  QZD84_RS08080 luxO 1748948..1750492 (-) 1545 WP_203528884.1 sigma 54-interacting transcriptional regulator Regulator
  QZD84_RS08085 - 1750764..1751144 (-) 381 WP_005454845.1 Hpt domain-containing protein -
  QZD84_RS08090 - 1751157..1751843 (-) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  QZD84_RS08095 - 1751843..1753912 (-) 2070 WP_223304365.1 SLBB domain-containing protein -
  QZD84_RS08100 - 1753942..1754844 (-) 903 WP_308386145.1 OmpA family protein -
  QZD84_RS08105 - 1754871..1755191 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57449.32 Da        Isoelectric Point: 5.7481

>NTDB_id=916973 QZD84_RS08080 WP_203528884.1 1748948..1750492(-) (luxO) [Vibrio parahaemolyticus strain BM26A]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRNNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVPPV
HVESSSPSNNLNGHNAPAMQTQPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=916973 QZD84_RS08080 WP_203528884.1 1748948..1750492(-) (luxO) [Vibrio parahaemolyticus strain BM26A]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAAACAGGTCGTGAAGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGGGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACTGCACACGGTAGCGTCGACTTAGCCGTAAACTTGATTCAAAAAGGTGCAGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGGCTTAAAACCTCTGTGGCACTGCATCTAAAACGAGCAAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCAACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCGGCAACATTGGCGCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATT
GTCACGCTAGCCAAGCATTTTCTCACAACTTACGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTAGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTACCCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCCTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.499

97.082

0.481