Detailed information NTG0916972

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: QZD84_RS07250
• Genome accession: NZ_CP141290
• Coordinates: 1549777..1551198 (-)
• Length: 473 a.a.
• NCBI ID: WP_308386167.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM26A
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1544777..1556198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZD84_RS07225	-	1545341..1545991 (+)	651	WP_308386168.1	thiopurine S-methyltransferase	-
QZD84_RS07230	purT	1546093..1547268 (-)	1176	WP_023584297.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
QZD84_RS07235	cdd	1547416..1548303 (-)	888	WP_025505218.1	cytidine deaminase	-
QZD84_RS07240	-	1548668..1549345 (-)	678	WP_005454891.1	LrgB family protein	-
QZD84_RS07245	-	1549347..1549721 (-)	375	WP_005455074.1	CidA/LrgA family protein	-
QZD84_RS07250	sbcB	1549777..1551198 (-)	1422	WP_308386167.1	exodeoxyribonuclease I	Machinery gene
QZD84_RS07255	-	1551354..1552727 (-)	1374	WP_025575005.1	L-cystine transporter	-
QZD84_RS07260	-	1552920..1553615 (-)	696	WP_017448627.1	NAD(P)H-binding protein	-
QZD84_RS07265	cobT	1554299..1555342 (+)	1044	WP_021453099.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
QZD84_RS07270	-	1555387..1556139 (+)	753	WP_031776489.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54601.88 Da
• Isoelectric Point: 4.9230

>NTDB_id=916972 QZD84_RS07250 WP_308386167.1 1549777..1551198(-) (sbcB) [Vibrio parahaemolyticus strain BM26A]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSNPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=916972 QZD84_RS07250 WP_308386167.1 1549777..1551198(-) (sbcB) [Vibrio parahaemolyticus strain BM26A]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAACCCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.915	100	0.799