Detailed information NTG0916937

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QZL39_RS13495
• Genome accession: NZ_CP141287
• Coordinates: 2870926..2871915 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain I14B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2865926..2876915

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL39_RS13480	recA	2866475..2867518 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
QZL39_RS13485	pncC	2867719..2868201 (-)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
QZL39_RS13490	mutS	2868286..2870847 (+)	2562	WP_308390581.1	DNA mismatch repair protein MutS	-
QZL39_RS13495	rpoS	2870926..2871915 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
QZL39_RS13500	-	2871996..2872919 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
QZL39_RS13505	-	2872934..2873560 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QZL39_RS13510	surE	2873560..2874336 (-)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
QZL39_RS13515	truD	2874336..2875379 (-)	1044	WP_191686266.1	tRNA pseudouridine(13) synthase TruD	-
QZL39_RS13520	ispF	2875426..2875902 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QZL39_RS13525	ispD	2875920..2876624 (-)	705	WP_025442246.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QZL39_RS13530	ftsB	2876626..2876907 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=916937 QZL39_RS13495 WP_005478537.1 2870926..2871915(-) (rpoS) [Vibrio parahaemolyticus strain I14B]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=916937 QZL39_RS13495 WP_005478537.1 2870926..2871915(-) (rpoS) [Vibrio parahaemolyticus strain I14B]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851