Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QZL39_RS13365 Genome accession   NZ_CP141287
Coordinates   2848814..2849332 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain I14B     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2843814..2854332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL39_RS13340 rimM 2843922..2844470 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  QZL39_RS13345 rpsP 2844499..2844747 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  QZL39_RS13350 ffh 2844957..2846339 (-) 1383 WP_005462555.1 signal recognition particle protein -
  QZL39_RS13355 - 2846552..2847346 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  QZL39_RS13360 - 2847472..2848752 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  QZL39_RS13365 luxS 2848814..2849332 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  QZL39_RS13370 - 2849399..2850004 (-) 606 WP_015297256.1 hypothetical protein -
  QZL39_RS13375 gshA 2850029..2851597 (-) 1569 WP_102600358.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=916934 QZL39_RS13365 WP_005462534.1 2848814..2849332(-) (luxS) [Vibrio parahaemolyticus strain I14B]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=916934 QZL39_RS13365 WP_005462534.1 2848814..2849332(-) (luxS) [Vibrio parahaemolyticus strain I14B]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884