Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV19_RS02610 Genome accession   NZ_AP025463
Coordinates   520574..521092 (+) Length   172 a.a.
NCBI ID   WP_065676618.1    Uniprot ID   A0A1C3JF74
Organism   Vibrio celticus strain CECT 7224     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 515574..526092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS02600 gshA 518320..519888 (+) 1569 WP_065676616.1 glutamate--cysteine ligase -
  OCV19_RS02605 - 519899..520549 (+) 651 WP_083994322.1 hypothetical protein -
  OCV19_RS02610 luxS 520574..521092 (+) 519 WP_065676618.1 S-ribosylhomocysteine lyase Regulator
  OCV19_RS02615 - 521207..522478 (-) 1272 WP_019825852.1 HlyC/CorC family transporter -
  OCV19_RS02620 - 522606..523400 (-) 795 WP_019825854.1 inner membrane protein YpjD -
  OCV19_RS02625 ffh 523601..524995 (+) 1395 WP_010435884.1 signal recognition particle protein -
  OCV19_RS02630 rpsP 525208..525456 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  OCV19_RS02635 rimM 525481..526035 (+) 555 WP_017063236.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18994.69 Da        Isoelectric Point: 4.4901

>NTDB_id=91692 OCV19_RS02610 WP_065676618.1 520574..521092(+) (luxS) [Vibrio celticus strain CECT 7224]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIITAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91692 OCV19_RS02610 WP_065676618.1 520574..521092(+) (luxS) [Vibrio celticus strain CECT 7224]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCAGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTAGAGCACCTATACGCTGGTTTCATGCGTAATCAATTGAACGGTTCAGATGTAGAGATCATCGATATCTCACCG
ATGGGCTGTCGCACGGGTTTCTACATGAGCCTGATTGGTACGCCTACAGAGCAACAAGTGGCTGACGGTTGGTTGGCAGC
GATGCAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACCGCAGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCGAATGCGATCATTACAGCAGGTATCTCGGTAAACAAGAATGATGAACTGGCA
CTGCCAGAGTCTATGCTGCAAGAGCTTAAAATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3JF74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment