Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCV19_RS02485 Genome accession   NZ_AP025463
Coordinates   498206..499186 (+) Length   326 a.a.
NCBI ID   WP_017059027.1    Uniprot ID   A0A1E5FN76
Organism   Vibrio celticus strain CECT 7224     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 493206..504186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS02455 ispD 493454..494155 (+) 702 WP_065676605.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OCV19_RS02460 ispF 494158..494637 (+) 480 WP_004739053.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCV19_RS02465 truD 494660..495706 (+) 1047 WP_065676606.1 tRNA pseudouridine(13) synthase TruD -
  OCV19_RS02470 surE 495788..496531 (+) 744 WP_065676607.1 5'/3'-nucleotidase SurE -
  OCV19_RS02475 - 496532..497158 (+) 627 WP_019826319.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCV19_RS02480 nlpD 497193..498107 (+) 915 WP_065676608.1 murein hydrolase activator NlpD -
  OCV19_RS02485 rpoS 498206..499186 (+) 981 WP_017059027.1 RNA polymerase sigma factor RpoS Regulator
  OCV19_RS02490 mutS 499327..501888 (-) 2562 WP_065676609.1 DNA mismatch repair protein MutS -
  OCV19_RS02495 pncC 502013..502507 (+) 495 WP_065676634.1 nicotinamide-nucleotide amidase -
  OCV19_RS02500 recA 502647..503687 (+) 1041 WP_029225458.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37218.43 Da        Isoelectric Point: 5.1506

>NTDB_id=91689 OCV19_RS02485 WP_017059027.1 498206..499186(+) (rpoS) [Vibrio celticus strain CECT 7224]
MSISNAVTKEEFDLDQATTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=91689 OCV19_RS02485 WP_017059027.1 498206..499186(+) (rpoS) [Vibrio celticus strain CECT 7224]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGTTTAGATGCCACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTATATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTAGTGGTAAAAATTTCACGTCGTTATAGCAACCGCGGCCT
TGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAGTTTGATCCAGAGCGTGGCTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGTTAATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCGGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCGCTGTTGGATATTATTCCAGACATCAATAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCACGTCGATTTGGACTACTGGGTTATGAACCGTCAACATTAGAAGAAGTAGGCCGCGAAATCAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGTCTGAATATGGAAAACCTG
TTCAACGTAGAAAACGACTAG

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(255-308)

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(87-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5FN76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.737

100

0.837

Multiple sequence alignment