Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   U4959_RS01490 Genome accession   NZ_CP141284
Coordinates   321015..321341 (+) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain H1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 316015..326341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS01460 (U4959_01460) - 316464..317240 (+) 777 WP_042892805.1 uroporphyrinogen-III synthase -
  U4959_RS01465 (U4959_01465) - 317237..318067 (+) 831 WP_151974709.1 hypothetical protein -
  U4959_RS01470 (U4959_01470) - 318074..319267 (+) 1194 WP_151711410.1 heme biosynthesis protein HemY -
  U4959_RS01475 (U4959_01475) - 319276..319707 (+) 432 WP_004958542.1 acyl-CoA thioesterase -
  U4959_RS16270 - 319864..320683 (+) 820 WP_410468709.1 IS5 family transposase -
  U4959_RS01490 (U4959_01490) hns 321015..321341 (+) 327 WP_004958548.1 H-NS family nucleoid-associated regulatory protein Regulator
  U4959_RS01495 (U4959_01495) gspN 321522..322265 (+) 744 WP_005403545.1 type II secretion system protein N -
  U4959_RS01500 (U4959_01500) - 322265..323113 (+) 849 WP_004957388.1 type II secretion system protein N -
  U4959_RS01505 (U4959_01505) gspD 323155..325410 (+) 2256 WP_004958549.1 type II secretion system secretin GspD -
  U4959_RS01510 (U4959_01510) - 325474..326085 (+) 612 WP_004958551.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=916873 U4959_RS01490 WP_004958548.1 321015..321341(+) (hns) [Acinetobacter junii strain H1]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=916873 U4959_RS01490 WP_004958548.1 321015..321341(+) (hns) [Acinetobacter junii strain H1]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAGCCACGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907