Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   U4959_RS00975 Genome accession   NZ_CP141284
Coordinates   210201..211352 (-) Length   383 a.a.
NCBI ID   WP_252665766.1    Uniprot ID   -
Organism   Acinetobacter junii strain H1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 205201..216352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS00955 (U4959_00955) - 206373..207038 (+) 666 WP_171493075.1 TetR/AcrR family transcriptional regulator -
  U4959_RS00960 (U4959_00960) - 207142..208062 (+) 921 WP_151690758.1 DMT family transporter -
  U4959_RS00965 (U4959_00965) - 208457..209026 (-) 570 WP_151690757.1 Sua5/YciO/YrdC/YwlC family protein -
  U4959_RS00970 (U4959_00970) dprA 209064..210191 (-) 1128 WP_004905514.1 DNA-processing protein DprA Machinery gene
  U4959_RS00975 (U4959_00975) tsaP 210201..211352 (-) 1152 WP_252665766.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  U4959_RS00980 (U4959_00980) def 211473..212003 (+) 531 WP_004905508.1 peptide deformylase -
  U4959_RS00985 (U4959_00985) - 212025..212462 (+) 438 WP_042892177.1 DUF2946 family protein -
  U4959_RS00990 (U4959_00990) - 212536..214632 (+) 2097 WP_252665768.1 TonB-dependent copper receptor -
  U4959_RS00995 (U4959_00995) - 214679..215440 (-) 762 WP_004956542.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41859.97 Da        Isoelectric Point: 9.0745

>NTDB_id=916868 U4959_RS00975 WP_252665766.1 210201..211352(-) (tsaP) [Acinetobacter junii strain H1]
MKKVLNGIHSFHALGLKKQLIAVAICAGLGMTVNITHAASPNVSPPSVKAGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGGGTTLRPQVRIEALNNSVPVIPLAHIQQWLER
SSVLPADAIANTPYILGTADNRVLAGKGQSVYVRGQGLENGQRYGVYRESEPYIVVDEQGKKQNLGVELLQVASGVAVRN
ENDITTVELTDSYNGEVRRGDRVMLEQEAMLPTLFYPIDAKQVRDGGKVIRVLGSIGTAAKNGVVTVDRGTADGVEIGQV
FSTYQEGEIVQDPKTKEKVKLPGQYVGSLMIFKSFDRISYAYVLESELPIKVGSNIQPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=916868 U4959_RS00975 WP_252665766.1 210201..211352(-) (tsaP) [Acinetobacter junii strain H1]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGTTGCCATCTGTGC
AGGATTAGGCATGACGGTAAATATAACGCATGCAGCAAGCCCTAATGTTAGCCCACCCTCTGTAAAAGCTGGGGCACCAC
ATGTCTATGTAGTGAAAAAAGGCGATACCCTTTGGGATATCTCAGGCAAGTTTTTAAGTAAACCATGGCGCTGGCCAGAA
ATTTGGGCAAGCAATAAACACGTTAAGAATCCTCACTGGATTTATCCAGGTGACCGTTTACTACTCTGTAGTTTGAATGG
CAAACCGTTAATCGGTAAAGATGAAGGTGATGGTTGTGACGGTATTATTCGTCGTTATACAGGTGGCGGAACAACTTTAC
GTCCGCAAGTACGTATCGAAGCATTGAACAATAGTGTGCCTGTTATTCCATTGGCTCATATTCAACAATGGTTAGAACGT
AGTTCAGTATTACCAGCGGATGCGATTGCGAATACCCCTTATATCTTAGGCACAGCTGACAATCGCGTGCTTGCAGGCAA
AGGACAAAGTGTTTACGTCCGTGGTCAAGGTCTAGAAAATGGTCAGCGTTATGGCGTTTACCGTGAAAGTGAACCTTACA
TCGTTGTCGATGAGCAAGGCAAAAAACAAAACCTAGGTGTTGAATTACTTCAAGTCGCATCTGGTGTTGCTGTGCGCAAT
GAAAACGACATTACTACGGTTGAACTCACTGATAGCTATAACGGCGAAGTTCGTCGTGGTGATCGCGTGATGCTTGAACA
AGAGGCAATGTTGCCAACCTTATTCTATCCTATCGATGCAAAACAAGTACGCGATGGCGGTAAAGTGATTCGTGTATTAG
GATCGATTGGTACAGCCGCAAAAAATGGTGTTGTCACTGTTGATCGTGGTACTGCCGATGGCGTTGAAATTGGTCAAGTC
TTTAGCACCTACCAAGAGGGTGAAATCGTACAAGATCCAAAAACTAAAGAGAAAGTTAAATTACCTGGACAATATGTGGG
TAGCTTGATGATCTTCAAGAGTTTTGATCGTATCAGCTATGCCTACGTTTTAGAAAGTGAACTACCAATCAAGGTCGGTT
CAAACATCCAACCACCACGCTTGGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.656

100

0.728