Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   U7118_RS22200 Genome accession   NZ_CP141283
Coordinates   4128005..4128295 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain DKU_09     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4123005..4133295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS22185 (U7118_22185) yabE 4123200..4124513 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  U7118_RS22190 (U7118_22190) dayD 4124669..4125436 (-) 768 WP_014478595.1 TatD family hydrolase -
  U7118_RS22195 (U7118_22195) metG 4125516..4127510 (-) 1995 WP_129134154.1 methionine--tRNA ligase -
  U7118_RS22200 (U7118_22200) abrB 4128005..4128295 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  U7118_RS22205 (U7118_22205) rsmI 4128344..4129222 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  U7118_RS22210 (U7118_22210) yazA 4129197..4129496 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  U7118_RS22215 (U7118_22215) trmNF 4129483..4130226 (-) 744 WP_041338388.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  U7118_RS22220 (U7118_22220) yabA 4130285..4130644 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  U7118_RS22225 (U7118_22225) ricT 4130659..4131486 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  U7118_RS22230 (U7118_22230) holB 4131489..4132478 (-) 990 WP_088272134.1 DNA polymerase III subunit delta' -
  U7118_RS22235 (U7118_22235) yaaR 4132490..4132930 (-) 441 WP_009966249.1 YaaR family protein -
  U7118_RS22240 (U7118_22240) darA 4132943..4133272 (-) 330 WP_088272133.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=916862 U7118_RS22200 WP_003226760.1 4128005..4128295(+) (abrB) [Bacillus subtilis strain DKU_09]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=916862 U7118_RS22200 WP_003226760.1 4128005..4128295(+) (abrB) [Bacillus subtilis strain DKU_09]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1