Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   U7118_RS16750 Genome accession   NZ_CP141283
Coordinates   3082560..3083138 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain DKU_09     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3077560..3088138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS16715 (U7118_16715) lepB 3077567..3078073 (-) 507 WP_003233128.1 signal peptidase I -
  U7118_RS16720 (U7118_16720) yhjE 3078075..3078698 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  U7118_RS16725 (U7118_16725) - 3078850..3079221 (+) 372 WP_014476361.1 hypothetical protein -
  U7118_RS16730 (U7118_16730) yhjC 3079420..3079620 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  U7118_RS16735 (U7118_16735) yhjB 3079617..3081086 (+) 1470 WP_014479374.1 sodium:solute symporter family protein -
  U7118_RS16740 (U7118_16740) yhjA 3081130..3081399 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  U7118_RS16745 (U7118_16745) yhxD 3081616..3082515 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  U7118_RS16750 (U7118_16750) comK 3082560..3083138 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  U7118_RS16755 (U7118_16755) yhzC 3083431..3083664 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  U7118_RS16760 (U7118_16760) yhxC 3083692..3084549 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  U7118_RS16765 (U7118_16765) comW 3084653..3086181 (+) 1529 Protein_3317 FAD-dependent oxidoreductase -
  U7118_RS22515 hemAT 3086437..3086814 (+) 378 Protein_3318 heme-based aerotactic transducer HemAT -
  U7118_RS22520 - 3086821..3087618 (+) 798 WP_396125290.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=916847 U7118_RS16750 WP_003245329.1 3082560..3083138(-) (comK) [Bacillus subtilis strain DKU_09]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=916847 U7118_RS16750 WP_003245329.1 3082560..3083138(-) (comK) [Bacillus subtilis strain DKU_09]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1