Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   U7118_RS16185 Genome accession   NZ_CP141283
Coordinates   2969689..2970810 (-) Length   373 a.a.
NCBI ID   WP_235091746.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 2964689..2975810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS16160 (U7118_16160) cwlQ 2964827..2965561 (+) 735 WP_250615380.1 bifunctional muramidase/murein lytic transglycosylase -
  U7118_RS16165 (U7118_16165) bhbI 2965816..2966214 (+) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  U7118_RS16170 (U7118_16170) spxH 2966211..2967110 (+) 900 WP_003245184.1 protease adaptor protein SpxH -
  U7118_RS16175 (U7118_16175) - 2967425..2967592 (+) 168 WP_003244944.1 hypothetical protein -
  U7118_RS16180 (U7118_16180) pepF 2967630..2969459 (-) 1830 WP_173401378.1 oligoendopeptidase F -
  U7118_RS16185 (U7118_16185) coiA 2969689..2970810 (-) 1122 WP_235091746.1 competence protein CoiA Machinery gene
  U7118_RS16190 (U7118_16190) - 2970884..2971006 (+) 123 WP_003245684.1 hypothetical protein -
  U7118_RS16195 (U7118_16195) mecA 2971001..2971657 (-) 657 WP_014479448.1 adaptor protein MecA Regulator
  U7118_RS16200 (U7118_16200) - 2971624..2971764 (-) 141 WP_119122854.1 hypothetical protein -
  U7118_RS16205 (U7118_16205) yjbE 2971934..2972590 (+) 657 WP_014479447.1 TerC family protein -
  U7118_RS16210 (U7118_16210) spx 2972633..2973028 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  U7118_RS16215 (U7118_16215) yjbC 2973209..2973787 (-) 579 Protein_3207 GNAT family N-acetyltransferase -
  U7118_RS16220 (U7118_16220) yjbB 2973951..2975168 (-) 1218 WP_072592593.1 MFS transporter -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43795.83 Da        Isoelectric Point: 10.0622

>NTDB_id=916839 U7118_RS16185 WP_235091746.1 2969689..2970810(-) (coiA) [Bacillus subtilis strain DKU_09]
MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLKTQRASPILEP
YIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAFHWQFINASPY
RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGADDLFFTEPKPSIQYSGWTKAIHRFRHKPHRFNSKEINRL
RLLFYEKRQTSFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNKNIALRFECSE
ECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=916839 U7118_RS16185 WP_235091746.1 2969689..2970810(-) (coiA) [Bacillus subtilis strain DKU_09]
ATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACGGTTCTTCTGTCCGGTATGCGGGGGAGAGCT
AGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTGCTCCATAGACATCGAACCGG
AAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAAACACAACGGGCTTCACCAATATTGGAGCCG
TATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGAGCATATGCTTGCTGTTGAATATCAATGCGC
CACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAGAAGGAATCATTCCGCAGTGGATTATGGGAT
ACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTTCATTGGCAGTTTATCAATGCAAGTCCATAC
AGAGAGCTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAGCCACATCATTCCATTCTACACAAACCATTC
TTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGACGATCTTTTTTTCACTGAACCGAAACCCTCAATTC
AATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCATCGGTTTAACTCAAAGGAAATAAATCGCCTT
AGGCTGCTGTTTTATGAGAAGCGGCAGACATCTTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGAAAAGGGGC
AGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTGTATTTGTTTATGACGGATCTTGGAGGTAAACGTGCGCCAA
TTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAGAACATTGCACTCAGGTTTGAATGCAGCGAA
GAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAATCAGCCTGCAGGCGGCATACACTCCATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.391

100

0.984