Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   U7118_RS14655 Genome accession   NZ_CP141283
Coordinates   2697510..2698085 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2696292..2702131 2697510..2698085 within 0


Gene organization within MGE regions


Location: 2696292..2702131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS14650 (U7118_14650) - 2696292..2697442 (+) 1151 WP_087614160.1 IS3 family transposase -
  U7118_RS14655 (U7118_14655) rok 2697510..2698085 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  U7118_RS14660 (U7118_14660) ykuV 2698551..2698997 (-) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  U7118_RS14665 (U7118_14665) ahpA 2699067..2699609 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  U7118_RS14670 (U7118_14670) mscT 2699846..2700649 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  U7118_RS14675 (U7118_14675) - 2700779..2702131 (+) 1353 WP_014478984.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=916834 U7118_RS14655 WP_003232378.1 2697510..2698085(-) (rok) [Bacillus subtilis strain DKU_09]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=916834 U7118_RS14655 WP_003232378.1 2697510..2698085(-) (rok) [Bacillus subtilis strain DKU_09]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1