Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   U7118_RS14530 Genome accession   NZ_CP141283
Coordinates   2672440..2672718 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain DKU_09     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2667440..2677718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS14510 (U7118_14510) ade 2667505..2669238 (-) 1734 WP_069837481.1 adenine deaminase -
  U7118_RS14515 (U7118_14515) ktrC 2669393..2670058 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  U7118_RS14520 (U7118_14520) ykqA 2670121..2670948 (-) 828 WP_324271307.1 gamma-glutamylcyclotransferase -
  U7118_RS14525 (U7118_14525) kinC 2670964..2672250 (-) 1287 WP_121591764.1 two-component sensor histidine kinase KinC -
  U7118_RS14530 (U7118_14530) abrB 2672440..2672718 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  U7118_RS14535 (U7118_14535) mreBH 2673002..2674009 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  U7118_RS14540 (U7118_14540) ykpC 2674110..2674244 (+) 135 WP_003238865.1 protein YkpC -
  U7118_RS14545 (U7118_14545) ampS 2674353..2675585 (+) 1233 WP_003232341.1 aminopeptidase -
  U7118_RS14550 (U7118_14550) panEB 2675619..2676530 (-) 912 WP_137200747.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=916833 U7118_RS14530 WP_003244728.1 2672440..2672718(-) (abrB) [Bacillus subtilis strain DKU_09]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=916833 U7118_RS14530 WP_003244728.1 2672440..2672718(-) (abrB) [Bacillus subtilis strain DKU_09]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTGGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576