Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   U7118_RS11190 Genome accession   NZ_CP141283
Coordinates   2066819..2067439 (-) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain DKU_09     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2061819..2072439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS11170 (U7118_11170) dnaD 2062110..2062808 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  U7118_RS11175 (U7118_11175) nth 2062827..2063486 (+) 660 WP_009967580.1 endonuclease III -
  U7118_RS11180 (U7118_11180) ypoC 2063483..2063977 (+) 495 WP_009967579.1 YpoC family protein -
  U7118_RS11185 (U7118_11185) ponA 2064053..2066797 (-) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  U7118_RS11190 (U7118_11190) recU 2066819..2067439 (-) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  U7118_RS11195 (U7118_11195) yppC 2067480..2068442 (+) 963 WP_033881326.1 DUF2515 domain-containing protein -
  U7118_RS11200 (U7118_11200) sspM 2068467..2068571 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  U7118_RS11205 (U7118_11205) yppD 2068770..2069015 (+) 246 WP_021481526.1 DUF5446 family protein -
  U7118_RS11210 (U7118_11210) yppE 2069061..2069432 (+) 372 WP_021481525.1 YppE family protein -
  U7118_RS11215 (U7118_11215) yppF 2069471..2069659 (-) 189 WP_003230690.1 YppF family protein -
  U7118_RS11220 (U7118_11220) sppG 2069847..2070224 (+) 378 WP_015251832.1 YppG family protein -
  U7118_RS11225 (U7118_11225) ypqA 2070245..2070664 (-) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  U7118_RS11230 (U7118_11230) ptsA 2070802..2071308 (+) 507 WP_029726788.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=916828 U7118_RS11190 WP_014480105.1 2066819..2067439(-) (recU) [Bacillus subtilis strain DKU_09]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=916828 U7118_RS11190 WP_014480105.1 2066819..2067439(-) (recU) [Bacillus subtilis strain DKU_09]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCACCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995