Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   U7118_RS09390 Genome accession   NZ_CP141283
Coordinates   1743599..1744366 (+) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain DKU_09     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1738599..1749366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS09360 (U7118_09360) pgpH 1738895..1741030 (+) 2136 WP_324271582.1 cyclic-di-AMP phosphodiesterase PgpH -
  U7118_RS09365 (U7118_09365) ybeY 1741031..1741504 (+) 474 WP_032722131.1 rRNA maturation RNase YbeY -
  U7118_RS09370 (U7118_09370) unpK 1741485..1741856 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  U7118_RS09375 (U7118_09375) - 1741975..1742385 (+) 411 WP_003230049.1 cytidine deaminase -
  U7118_RS09380 (U7118_09380) era 1742366..1743271 (+) 906 WP_003230051.1 GTPase Era -
  U7118_RS09385 (U7118_09385) yqzL 1743419..1743562 (+) 144 WP_003230053.1 YqzL family protein -
  U7118_RS09390 (U7118_09390) recO 1743599..1744366 (+) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  U7118_RS09395 (U7118_09395) glyQ 1744663..1745550 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  U7118_RS09400 (U7118_09400) glyS 1745543..1747582 (+) 2040 WP_088272396.1 glycine--tRNA ligase subunit beta -
  U7118_RS09405 (U7118_09405) ccpN 1747715..1748353 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  U7118_RS09410 (U7118_09410) ppsR 1748379..1749191 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=916816 U7118_RS09390 WP_014477369.1 1743599..1744366(+) (recO) [Bacillus subtilis strain DKU_09]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=916816 U7118_RS09390 WP_014477369.1 1743599..1744366(+) (recO) [Bacillus subtilis strain DKU_09]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996