Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   U7118_RS08030 Genome accession   NZ_CP141283
Coordinates   1513898..1514644 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1508898..1519644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS08015 (U7118_08015) - 1509125..1509316 (-) 192 WP_003222590.1 hypothetical protein -
  U7118_RS08020 (U7118_08020) valS 1509764..1512406 (+) 2643 WP_017697542.1 valine--tRNA ligase -
  U7118_RS08025 (U7118_08025) folC 1512466..1513758 (+) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  U7118_RS08030 (U7118_08030) comC 1513898..1514644 (+) 747 WP_072592551.1 prepilin peptidase Machinery gene
  U7118_RS08035 (U7118_08035) spoIIB 1514778..1515776 (+) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  U7118_RS08040 (U7118_08040) maf 1515929..1516498 (+) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  U7118_RS08045 (U7118_08045) radC 1516535..1516942 (+) 408 Protein_1579 RadC family protein -
  U7118_RS08050 (U7118_08050) - 1516955..1518373 (-) 1419 WP_324271625.1 recombinase family protein -
  U7118_RS08055 (U7118_08055) - 1518422..1518868 (-) 447 WP_060399203.1 ImmA/IrrE family metallo-endopeptidase -
  U7118_RS08060 (U7118_08060) - 1518882..1519316 (-) 435 WP_103330184.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=916808 U7118_RS08030 WP_072592551.1 1513898..1514644(+) (comC) [Bacillus subtilis strain DKU_09]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=916808 U7118_RS08030 WP_072592551.1 1513898..1514644(+) (comC) [Bacillus subtilis strain DKU_09]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996