Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U7118_RS05335 Genome accession   NZ_CP141283
Coordinates   1024200..1024844 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019200..1029844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS05305 (U7118_05305) - 1019550..1019918 (-) 369 WP_046381300.1 hypothetical protein -
  U7118_RS05310 (U7118_05310) - 1020033..1020158 (-) 126 WP_003228793.1 hypothetical protein -
  U7118_RS05315 (U7118_05315) degQ 1020380..1020520 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  U7118_RS05320 (U7118_05320) - 1020705..1021568 (+) 864 WP_014480705.1 polyprenyl synthetase family protein -
  U7118_RS05325 (U7118_05325) comX 1021570..1021791 (+) 222 WP_014480704.1 competence pheromone ComX -
  U7118_RS05330 (U7118_05330) comP 1021807..1024119 (+) 2313 WP_103330147.1 sensor histidine kinase Regulator
  U7118_RS05335 (U7118_05335) comA 1024200..1024844 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  U7118_RS05340 (U7118_05340) yuxO 1024863..1025243 (+) 381 WP_069837723.1 hotdog fold thioesterase -
  U7118_RS05345 (U7118_05345) mnhG 1025282..1025656 (-) 375 WP_324271460.1 monovalent cation/H(+) antiporter subunit G -
  U7118_RS05350 (U7118_05350) mrpF 1025640..1025924 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  U7118_RS05355 (U7118_05355) mrpE 1025924..1026400 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  U7118_RS05360 (U7118_05360) mrpD 1026406..1027887 (-) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  U7118_RS05365 (U7118_05365) mrpC 1027880..1028221 (-) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  U7118_RS05370 (U7118_05370) mrpB 1028221..1028652 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=916803 U7118_RS05335 WP_003220716.1 1024200..1024844(+) (comA) [Bacillus subtilis strain DKU_09]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=916803 U7118_RS05335 WP_003220716.1 1024200..1024844(+) (comA) [Bacillus subtilis strain DKU_09]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1