Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ABZS48_RS03685 Genome accession   NZ_CP160100
Coordinates   730444..731595 (-) Length   383 a.a.
NCBI ID   WP_000020365.1    Uniprot ID   -
Organism   Staphylococcus aureus strain A_01_sau     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 725444..736595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZS48_RS03665 (ABZS48_03670) - 725839..726636 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  ABZS48_RS03670 (ABZS48_03675) - 726810..727025 (+) 216 WP_000026308.1 hypothetical protein -
  ABZS48_RS03675 (ABZS48_03680) rny 727323..728882 (-) 1560 WP_001050913.1 ribonuclease Y -
  ABZS48_RS03680 (ABZS48_03685) recA 729236..730279 (-) 1044 WP_000368166.1 recombinase RecA -
  ABZS48_RS03685 (ABZS48_03690) cinA 730444..731595 (-) 1152 WP_000020365.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ABZS48_RS03690 (ABZS48_03695) pgsA 731821..732399 (-) 579 WP_001025090.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABZS48_RS03695 (ABZS48_03700) - 732433..732825 (-) 393 WP_000859445.1 helix-turn-helix domain-containing protein -
  ABZS48_RS03700 (ABZS48_03705) - 732844..733671 (-) 828 WP_117424162.1 YmfK family protein -
  ABZS48_RS03705 (ABZS48_03710) ymfI 733776..734480 (-) 705 WP_000646222.1 elongation factor P 5-aminopentanone reductase -
  ABZS48_RS03710 (ABZS48_03715) yfmH 734480..735766 (-) 1287 WP_000664766.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43189.55 Da        Isoelectric Point: 6.4455

>NTDB_id=916791 ABZS48_RS03685 WP_000020365.1 730444..731595(-) (cinA) [Staphylococcus aureus strain A_01_sau]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQVMTPNNKQQALVIEGSTVLANHHGMAPGMIVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LYRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=916791 ABZS48_RS03685 WP_000020365.1 730444..731595(-) (cinA) [Staphylococcus aureus strain A_01_sau]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGTAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATAGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTTATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAACAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACTACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433