Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV19_RS01135 Genome accession   NZ_AP025463
Coordinates   247570..248574 (-) Length   334 a.a.
NCBI ID   WP_065677115.1    Uniprot ID   A0A1C3JHC2
Organism   Vibrio celticus strain CECT 7224     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 242570..253574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS01105 zapB 242731..242973 (+) 243 WP_008219652.1 cell division protein ZapB -
  OCV19_RS01110 rraA 243071..243589 (-) 519 WP_065677116.1 ribonuclease E activity regulator RraA -
  OCV19_RS01115 - 243663..244580 (-) 918 WP_017061151.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV19_RS01120 hslU 244736..246076 (-) 1341 WP_017061150.1 HslU--HslV peptidase ATPase subunit -
  OCV19_RS01125 hslV 246135..246683 (-) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  OCV19_RS01130 - 246908..247447 (-) 540 WP_048605407.1 SPOR domain-containing protein -
  OCV19_RS01135 cytR 247570..248574 (-) 1005 WP_065677115.1 DNA-binding transcriptional regulator CytR Regulator
  OCV19_RS01140 priA 248815..251016 (-) 2202 WP_065677114.1 primosomal protein N' -
  OCV19_RS01145 rpmE 251348..251566 (+) 219 WP_004737142.1 50S ribosomal protein L31 -
  OCV19_RS01150 - 251901..253190 (+) 1290 WP_017061144.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36513.01 Da        Isoelectric Point: 6.4911

>NTDB_id=91679 OCV19_RS01135 WP_065677115.1 247570..248574(-) (cytR) [Vibrio celticus strain CECT 7224]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKSEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=91679 OCV19_RS01135 WP_065677115.1 247570..248574(-) (cytR) [Vibrio celticus strain CECT 7224]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCGACTCGTAAACGAGTGGAAACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTTGTCTTACTGGGTGATAGTGGCCAACAAAAGAAGCGTGAGTCTTCGTT
TGTTAACTTAGTTTTCACCAAACAAGCTGACGGTATGCTATTGCTTGGCACTGACCATCCATTTGACGTCAGTAAGTCTG
AACAAAAGAACTTACCACCAATGGTGATGGCGTGTGAGTTTGCCCCTGAACTTGAACTTCCTACCGTACACATCGATAAC
CTGACCTCTGCATTTGAAGCCGTGAACTACCTAGCCCAGTTAGGTCATAAGCGTATCGCTCAAATATCAGGGCCAGTATC
GGCAACGCTGTGTAAGTTCCGCCAACAAGGCTATCAACAAGCGCTGCGTCGCGCTGGAGTATCAATGAACCCTGCCTATA
GCACTGTCGGCGACTTTACTTTTGAAGCCGGTGCTCAAGCGGTTCGTCAATTGTTGGCACTTCCTGAACAGCCTACAGCT
ATCTTCTGTCACAACGATGCGATGGCGATTGGTGCGATTCAAGAAGCGAAGAAACTGGGCTTACGCGTTCCTCAAGACCT
ATCGATTGTCGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACCATTTCTCAGCCTCGTTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTATTAAAAGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCTAAATTGGTGGTTCGAGGCAGTACAGCGCCGCCTCGAATATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3JHC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.458

99.401

0.889
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.701

0.871

Multiple sequence alignment