Detailed information NTG0916750

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: U6958_RS27965
• Genome accession: NZ_CP141274
• Coordinates: 5774687..5775907 (+)
• Length: 406 a.a.
• NCBI ID: WP_074923067.1
• Uniprot ID: A0A1H3RNY4
• Organism: Delftia lacustris strain DSM 21246
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5769687..5780907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6958_RS27945	coaD	5770457..5770957 (-)	501	WP_016449072.1	pantetheine-phosphate adenylyltransferase	-
U6958_RS27950	rsmD	5771088..5771795 (-)	708	WP_016454148.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
U6958_RS27955	-	5771792..5773153 (-)	1362	WP_046985885.1	pitrilysin family protein	-
U6958_RS27960	-	5773180..5774658 (-)	1479	WP_016449075.1	pitrilysin family protein	-
U6958_RS27965	pilA	5774687..5775907 (+)	1221	WP_074923067.1	signal recognition particle-docking protein FtsY	Machinery gene
U6958_RS27970	-	5776146..5777135 (+)	990	WP_074923066.1	tripartite tricarboxylate transporter substrate binding protein	-
U6958_RS27975	cutA	5777122..5777520 (-)	399	WP_074923065.1	divalent-cation tolerance protein CutA	-
U6958_RS27980	-	5777573..5778598 (-)	1026	WP_074923064.1	2-dehydropantoate 2-reductase	-
U6958_RS27985	-	5778617..5779450 (-)	834	WP_277849470.1	class II aldolase/adducin family protein	-
U6958_RS27990	-	5779443..5779988 (-)	546	WP_074923063.1	MarR family winged helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 42508.36 Da
• Isoelectric Point: 5.5266

>NTDB_id=916750 U6958_RS27965 WP_074923067.1 5774687..5775907(+) (pilA) [Delftia lacustris strain DSM 21246]
MFSFFKKKPTPSSAEISPADSSAAPEEAGIPATPPQDRAPDLPPGTPAPPATADTGSAWWRKPFGGGKGDAAPPAAPTAP
TAAASTLAPADFIAAPEPTAKPEAEGASRQNWMQRLKAGLRKTGSSIATVFTGTQINDALYEELEDALLMADTGVKATEH
LLTDLRRRVKEAKATDPAAVKALLADALADLLRPLEKPLIIGEHQPTVVMVAGVNGAGKTTSIGKLTKHLADEGQSVLLA
AADTFRAAAREQLGVWANRNTVEIVSQEGGDPAAVSFDAVTAGRARKKDVVLVDTAGRLPTQLHLMEELRKIRRVVTKAD
ATAPHEVLLVIDGNTGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKVEDLETFNAREF
AQALLS

Nucleotide

• Length: 1221 bp

>NTDB_id=916750 U6958_RS27965 WP_074923067.1 5774687..5775907(+) (pilA) [Delftia lacustris strain DSM 21246]
ATGTTCAGTTTTTTCAAGAAAAAGCCCACCCCCTCCTCCGCCGAGATTTCCCCGGCGGACAGCAGCGCCGCGCCTGAAGA
GGCCGGCATTCCCGCAACCCCGCCGCAGGACCGCGCCCCAGACCTGCCCCCTGGCACACCTGCCCCACCGGCCACAGCCG
ACACCGGCAGCGCCTGGTGGCGCAAGCCCTTCGGCGGCGGCAAGGGCGATGCCGCCCCGCCTGCCGCACCCACTGCACCC
ACTGCTGCTGCTTCCACGCTCGCGCCTGCCGACTTCATTGCCGCACCCGAGCCCACGGCCAAGCCCGAAGCCGAAGGCGC
CAGCCGCCAGAACTGGATGCAGCGCCTCAAGGCCGGACTGCGCAAGACCGGCAGCAGCATCGCTACGGTCTTCACCGGCA
CGCAGATCAACGATGCGCTGTACGAAGAGCTGGAAGACGCCCTGCTGATGGCCGACACCGGCGTCAAGGCCACCGAGCAC
CTGCTCACCGACCTGCGCCGCCGCGTCAAGGAAGCCAAGGCCACCGACCCCGCCGCCGTCAAGGCGTTGCTGGCCGATGC
ACTGGCCGACCTGCTGCGCCCGCTGGAAAAGCCGCTGATCATCGGCGAGCACCAGCCTACCGTGGTCATGGTCGCTGGCG
TCAACGGCGCAGGCAAGACCACCTCCATCGGCAAGCTGACCAAGCATCTGGCCGACGAAGGCCAGAGCGTGCTGCTGGCT
GCCGCCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTCGGCGTCTGGGCCAACCGCAACACGGTGGAGATCGTCAGCCA
GGAAGGCGGTGATCCTGCAGCCGTGAGCTTTGATGCCGTCACCGCCGGCCGCGCCCGCAAGAAGGATGTGGTGCTGGTGG
ACACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGATGGAAGAGCTGCGCAAGATCCGCCGCGTGGTCACCAAGGCCGAT
GCCACGGCACCGCACGAGGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTGGCCCAGGTGCGCGCCTTCGA
CGATGCACTGCAGCTCACGGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCCGCCATTGCCC
AGGAACGGCCGATCCCCGTGTACTTCATCGGCGTGGGCGAAAAGGTCGAGGACCTGGAGACCTTCAACGCCAGGGAATTC
GCGCAGGCGCTGCTGTCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (206-405)

• SRP54-type protein, helical bundle domain (SRP54_N) (125-188)

3D structure

• AlphaFold DB: A0A1H3RNY4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.227	100	0.502