Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV30_RS18725 Genome accession   NZ_AP025461
Coordinates   677528..678622 (+) Length   364 a.a.
NCBI ID   WP_065678166.1    Uniprot ID   A0A1C3II67
Organism   Vibrio atlanticus strain CECT 7223     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 672528..683622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS18700 - 674686..675312 (-) 627 WP_065678164.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCV30_RS18705 - 675476..675790 (-) 315 WP_004730049.1 DUF496 family protein -
  OCV30_RS18710 - 675986..676186 (+) 201 WP_009845676.1 hypothetical protein -
  OCV30_RS18715 - 676250..676906 (+) 657 WP_017100949.1 YceH family protein -
  OCV30_RS18720 - 676907..677221 (+) 315 WP_065678165.1 GIY-YIG nuclease family protein -
  OCV30_RS18725 luxP 677528..678622 (+) 1095 WP_065678166.1 substrate-binding domain-containing protein Regulator
  OCV30_RS18730 luxQ 678622..681195 (+) 2574 WP_065678167.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCV30_RS18735 - 681300..681650 (+) 351 WP_065678168.1 HopJ type III effector protein -
  OCV30_RS18740 - 681814..682122 (-) 309 WP_083994559.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41226.42 Da        Isoelectric Point: 4.9398

>NTDB_id=91674 OCV30_RS18725 WP_065678166.1 677528..678622(+) (luxP) [Vibrio atlanticus strain CECT 7223]
MKRLLILLGVAVFSASALSHGTHVLNGYWEYQDYLTKFPEQKALTDKMVEAVQNPPMPLRQVQDEPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRDNANPSQQSISLQEAIENKTDYLIFTLETTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHMTGSLKLADYFKQVSEPDSKYSVLYRSEGYISDARGDTFIHDVNSDTNFALKSSFYTKSS
KESGYQAAKISLANDKDLNFIYACSTDVALGAAEAIRESGRDVLVNGWGGGSAELEAIARGDLDVTVMRMNDDTGIAMAE
AIKWDLTGLEVPTVYSGEFEIVTKEDSPDRILELKQRAFRYSDQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=91674 OCV30_RS18725 WP_065678166.1 677528..678622(+) (luxP) [Vibrio atlanticus strain CECT 7223]
ATGAAACGTTTACTTATATTATTGGGGGTTGCCGTGTTTTCTGCGTCTGCTCTCTCCCACGGTACCCACGTCCTGAATGG
TTATTGGGAATATCAGGATTACCTCACTAAATTTCCAGAGCAAAAAGCATTGACCGATAAAATGGTTGAAGCTGTGCAAA
ATCCCCCTATGCCATTGAGGCAAGTTCAGGATGAACCTATCACGATTTCAGTTGTGTACCCGGGGCAACAGATCTCTGAT
TATTGGGTTCGTAATATCCAAGCCTTTGAGAAACGCCTAGATAAATTGAGAATTAATTATCAAATAAATCAGGTTTTTAC
TCGTGATAATGCTAACCCCTCTCAGCAGAGTATCTCTTTGCAAGAAGCGATTGAAAATAAAACGGATTATTTGATTTTTA
CGTTAGAGACGACGCGACACCGTAAGTTTATTGAACATGTGTTGAGCTCAACGGACACCAAGTTGATTTTGCAAAATATT
ACCACACCAGTACGTGCATGGGCCGATAGGCAGCCGTTCATGTACGTGGGTTTCGACCATATGACGGGGAGTTTAAAGCT
AGCGGATTACTTCAAACAAGTGAGTGAACCGGACAGCAAGTATTCTGTGTTATATCGTTCTGAAGGTTATATTAGTGATG
CTCGTGGAGATACCTTTATCCATGATGTGAATTCTGATACTAACTTTGCTCTTAAGTCGTCGTTTTACACAAAATCAAGT
AAAGAGAGCGGTTACCAAGCAGCTAAAATCAGCCTAGCTAACGATAAGGATCTAAACTTTATTTATGCATGCTCAACGGA
TGTTGCTCTGGGCGCAGCAGAAGCTATTCGAGAATCTGGTCGAGATGTCTTAGTTAATGGCTGGGGAGGCGGCTCTGCAG
AATTGGAAGCTATAGCAAGGGGCGACTTAGATGTTACGGTCATGCGCATGAATGATGATACGGGTATTGCGATGGCAGAG
GCAATTAAATGGGATCTTACCGGGTTGGAAGTTCCTACCGTTTATTCAGGTGAGTTTGAAATTGTGACTAAAGAGGATTC
TCCAGATCGTATTTTAGAACTTAAGCAGCGAGCATTTAGGTACTCAGACCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3II67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.5

100

0.632

Multiple sequence alignment