Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV30_RS14320 Genome accession   NZ_AP025460
Coordinates   3171328..3172332 (+) Length   334 a.a.
NCBI ID   WP_009848882.1    Uniprot ID   -
Organism   Vibrio atlanticus strain CECT 7223     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3166328..3177332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS14305 - 3166698..3168005 (-) 1308 WP_065679736.1 malic enzyme-like NAD(P)-binding protein -
  OCV30_RS14310 rpmE 3168337..3168555 (-) 219 WP_009848884.1 50S ribosomal protein L31 -
  OCV30_RS14315 priA 3168886..3171087 (+) 2202 WP_065679737.1 primosomal protein N' -
  OCV30_RS14320 cytR 3171328..3172332 (+) 1005 WP_009848882.1 DNA-binding transcriptional regulator CytR Regulator
  OCV30_RS14325 - 3172455..3172994 (+) 540 WP_009848881.1 SPOR domain-containing protein -
  OCV30_RS14330 hslV 3173223..3173771 (+) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  OCV30_RS14335 hslU 3173830..3175170 (+) 1341 WP_065679738.1 HslU--HslV peptidase ATPase subunit -
  OCV30_RS14340 - 3175326..3176243 (+) 918 WP_065679739.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV30_RS14345 rraA 3176317..3176835 (+) 519 WP_065679740.1 ribonuclease E activity regulator RraA -
  OCV30_RS14350 zapB 3176945..3177187 (-) 243 WP_009848877.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36523.05 Da        Isoelectric Point: 6.4911

>NTDB_id=91666 OCV30_RS14320 WP_009848882.1 3171328..3172332(+) (cytR) [Vibrio atlanticus strain CECT 7223]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPISATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDVLKGNDVQAGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=91666 OCV30_RS14320 WP_009848882.1 3171328..3172332(+) (cytR) [Vibrio atlanticus strain CECT 7223]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTTTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCTACTCGTAAGCGAGTTGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCGTATTTCGCAGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTCGTTTTACTGGGTGATAGCGGCCAACAGAAGAAGCGTGAGTCTTCATT
TGTTAACTTAGTATTCACGAAACAAGCTGACGGCATGCTACTACTTGGCACCGACCACCCGTTTGATGTCAGTAAGCCTG
AACAAAAAAATTTACCGCCGATGGTGATGGCGTGTGAGTTTGCCCCAGAGCTTGAACTCCCTACCGTACACATCGATAAC
CTGACCTCGGCATTTGAAGCGGTGAACTACCTAGCTCAGTTAGGTCATAAACGTATCGCTCAAATCTCAGGGCCCATATC
GGCAACGCTTTGTAAGTTCCGACAACAAGGCTACCAACAAGCGCTACGTCGTGCAGGGGTATCAATGAATCCTGCCTACA
GCACTGTCGGTGACTTTACCTTTGAAGCGGGCGCTCAAGCAGTTCGTCAATTACTCGCTCTTCCTGAACAGCCTACAGCG
ATCTTCTGTCATAACGATGCGATGGCCATCGGCGCGATTCAAGAAGCGAAAAAATTAGGCTTACGCGTTCCTCAAGATCT
ATCGATTGTCGGCTTTGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGTTATG
AGATTGGGCGCCAAGCAATGTTGATGATGCTCGACGTACTTAAAGGCAACGATGTACAAGCAGGGTCGCGTCTGCTTGAA
GCCAAATTAGTCGTTCGAGGTAGTACAGCGCCGCCTCGAATCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.458

99.401

0.889
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.701

0.871

Multiple sequence alignment