Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   U2H22_RS07520 Genome accession   NZ_CP141265
Coordinates   1410608..1411072 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain L2D39     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1405608..1416072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H22_RS07500 (U2H22_07500) - 1406089..1407909 (+) 1821 WP_043021222.1 PAS domain-containing protein -
  U2H22_RS07505 (U2H22_07505) - 1407934..1409103 (-) 1170 WP_007611083.1 aminotransferase A -
  U2H22_RS07510 (U2H22_07510) - 1409304..1409465 (-) 162 WP_007409608.1 hypothetical protein -
  U2H22_RS07515 (U2H22_07515) cheV 1409654..1410565 (+) 912 WP_043021221.1 chemotaxis protein CheV -
  U2H22_RS07520 (U2H22_07520) kre 1410608..1411072 (-) 465 WP_003154622.1 YkyB family protein Regulator
  U2H22_RS07525 (U2H22_07525) - 1411195..1412487 (-) 1293 WP_015239757.1 MFS transporter -
  U2H22_RS07530 (U2H22_07530) - 1412563..1413057 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  U2H22_RS07535 (U2H22_07535) - 1413132..1413995 (-) 864 WP_085341949.1 metallophosphoesterase -
  U2H22_RS07540 (U2H22_07540) fadH 1414140..1414904 (+) 765 WP_122503878.1 2,4-dienoyl-CoA reductase -
  U2H22_RS07545 (U2H22_07545) - 1415069..1415565 (+) 497 Protein_1428 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=916654 U2H22_RS07520 WP_003154622.1 1410608..1411072(-) (kre) [Bacillus velezensis strain L2D39]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=916654 U2H22_RS07520 WP_003154622.1 1410608..1411072(-) (kre) [Bacillus velezensis strain L2D39]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929