Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   U3G77_RS11985 Genome accession   NZ_CP141264
Coordinates   2661350..2661790 (+) Length   146 a.a.
NCBI ID   WP_039270781.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain DSM 365     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2656350..2666790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3G77_RS11960 (U3G77_11960) - 2657144..2657812 (+) 669 WP_029517689.1 uracil-DNA glycosylase -
  U3G77_RS11965 (U3G77_11965) - 2657829..2658251 (+) 423 WP_029517688.1 hypothetical protein -
  U3G77_RS11970 (U3G77_11970) - 2658372..2660258 (+) 1887 WP_039270780.1 Ig-like domain-containing protein -
  U3G77_RS11975 (U3G77_11975) - 2660327..2660629 (-) 303 WP_013310964.1 hypothetical protein -
  U3G77_RS11980 (U3G77_11980) - 2661015..2661209 (-) 195 WP_029517686.1 hypothetical protein -
  U3G77_RS11985 (U3G77_11985) nucA/comI 2661350..2661790 (+) 441 WP_039270781.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U3G77_RS11990 (U3G77_11990) - 2661783..2661959 (-) 177 WP_176715684.1 hypothetical protein -
  U3G77_RS11995 (U3G77_11995) - 2662074..2663894 (+) 1821 WP_039270782.1 sensor histidine kinase -
  U3G77_RS12000 (U3G77_12000) - 2663869..2665494 (+) 1626 WP_039270784.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16038.27 Da        Isoelectric Point: 9.3698

>NTDB_id=916612 U3G77_RS11985 WP_039270781.1 2661350..2661790(+) (nucA/comI) [Paenibacillus polymyxa strain DSM 365]
MKKKLLSFIALVLLAAGAYWFEGGNLLTKITGENPPSSVAQVTLQFPSGRYPETAQHIKEAIQAGKSPVCTIDREGAEQN
RKHSLTGVPTRKGYDRDEWPMAMCSEGGKGANVKYIAPKDNRGAGSWVSHQLDEYEDGTRVKFVIK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=916612 U3G77_RS11985 WP_039270781.1 2661350..2661790(+) (nucA/comI) [Paenibacillus polymyxa strain DSM 365]
TTGAAGAAAAAGTTGCTAAGTTTTATAGCTTTAGTTCTGCTAGCTGCGGGCGCGTACTGGTTTGAAGGAGGCAATCTTCT
TACGAAAATAACAGGAGAGAACCCGCCTTCCTCGGTGGCTCAGGTAACGCTGCAATTCCCGTCAGGTCGTTACCCTGAAA
CGGCGCAGCATATTAAGGAAGCCATTCAGGCGGGAAAATCACCAGTATGCACAATTGACCGTGAAGGAGCCGAGCAAAAT
CGCAAGCATTCGCTTACAGGTGTCCCCACTCGTAAGGGATACGATCGTGATGAATGGCCGATGGCTATGTGTTCAGAAGG
TGGCAAAGGTGCAAATGTCAAATACATAGCCCCTAAGGATAATCGTGGGGCAGGATCATGGGTTAGTCATCAATTGGATG
AGTATGAGGATGGAACTCGTGTAAAATTCGTTATTAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.269

71.233

0.486