Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   U3G77_RS06285 Genome accession   NZ_CP141264
Coordinates   1405031..1405984 (+) Length   317 a.a.
NCBI ID   WP_039273797.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain DSM 365     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1400031..1410984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3G77_RS06255 (U3G77_06255) - 1400859..1400987 (+) 129 WP_268988511.1 hypothetical protein -
  U3G77_RS06260 (U3G77_06260) - 1401724..1401852 (+) 129 WP_268988510.1 hypothetical protein -
  U3G77_RS26075 - 1402346..1402570 (-) 225 WP_413466317.1 ATP-binding cassette domain-containing protein -
  U3G77_RS06270 (U3G77_06270) - 1402680..1403597 (-) 918 WP_039273808.1 sensor histidine kinase -
  U3G77_RS06275 (U3G77_06275) - 1403594..1404271 (-) 678 WP_039273799.1 response regulator transcription factor -
  U3G77_RS06280 (U3G77_06280) - 1404584..1404712 (+) 129 WP_268988509.1 hypothetical protein -
  U3G77_RS06285 (U3G77_06285) ceuB 1405031..1405984 (+) 954 WP_039273797.1 ABC transporter permease Machinery gene
  U3G77_RS06290 (U3G77_06290) - 1405974..1406924 (+) 951 WP_039273794.1 iron chelate uptake ABC transporter family permease subunit -
  U3G77_RS06295 (U3G77_06295) - 1406918..1407676 (+) 759 WP_039273792.1 ABC transporter ATP-binding protein -
  U3G77_RS06300 (U3G77_06300) - 1407689..1408669 (+) 981 WP_039273791.1 siderophore ABC transporter substrate-binding protein -
  U3G77_RS06305 (U3G77_06305) - 1408703..1409446 (+) 744 WP_039273789.1 alpha/beta hydrolase -
  U3G77_RS06310 (U3G77_06310) - 1409726..1410637 (+) 912 WP_039273786.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34720.67 Da        Isoelectric Point: 9.9012

>NTDB_id=916605 U3G77_RS06285 WP_039273797.1 1405031..1405984(+) (ceuB) [Paenibacillus polymyxa strain DSM 365]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVASVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=916605 U3G77_RS06285 WP_039273797.1 1405031..1405984(+) (ceuB) [Paenibacillus polymyxa strain DSM 365]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTCGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGGAACCGATTCGTATCGCCCACCACCGCA
GGAACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCAGCGGGATTTTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTTATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTGGTCGGTTTGATGTTTGGAGGCATCTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGCCGCTACGAGATGCTGTATCTTAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCAGCCAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTCGGTGTCCTCTGTTGTCATCTTAACCGTTGGTACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAACCTGAAAAAGAGCCTGGCTCATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGGCGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTGGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508