Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   U6I89_RS14565 Genome accession   NZ_CP141263
Coordinates   2856126..2856872 (-) Length   248 a.a.
NCBI ID   WP_060399205.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2851126..2861872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS14535 (U6I89_14535) - 2851455..2851889 (+) 435 WP_060399202.1 helix-turn-helix domain-containing protein -
  U6I89_RS14540 (U6I89_14540) - 2851903..2852349 (+) 447 WP_060399203.1 ImmA/IrrE family metallo-endopeptidase -
  U6I89_RS14545 (U6I89_14545) - 2852380..2853816 (+) 1437 WP_178938628.1 recombinase family protein -
  U6I89_RS14550 (U6I89_14550) radC 2853829..2854236 (-) 408 Protein_2822 RadC family protein -
  U6I89_RS14555 (U6I89_14555) - 2854273..2854842 (-) 570 WP_003237578.1 Maf family nucleotide pyrophosphatase -
  U6I89_RS14560 (U6I89_14560) - 2854994..2855992 (-) 999 WP_060399204.1 SPOR domain-containing protein -
  U6I89_RS14565 (U6I89_14565) comC 2856126..2856872 (-) 747 WP_060399205.1 prepilin peptidase Machinery gene
  U6I89_RS14570 (U6I89_14570) - 2857014..2858306 (-) 1293 WP_060399206.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  U6I89_RS14575 (U6I89_14575) valS 2858366..2861008 (-) 2643 WP_060399207.1 valine--tRNA ligase -
  U6I89_RS14580 (U6I89_14580) - 2861456..2861647 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26483.04 Da        Isoelectric Point: 9.7945

>NTDB_id=916571 U6I89_RS14565 WP_060399205.1 2856126..2856872(-) (comC) [Bacillus inaquosorum strain BIM B-2002]
MLPILFILGFILGSFYYTAGCRIPLHISFITPRSACSFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPVAELVTA
CLFAAAGIRFGPSPELFPALVFISLLIIVAVTDIHFMLIPNRILIFFVPVLAAARLISPLDSWYAGLLGAAAGFLFLALI
AAITHGGIGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRHAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=916571 U6I89_RS14565 WP_060399205.1 2856126..2856872(-) (comC) [Bacillus inaquosorum strain BIM B-2002]
ATGCTTCCCATTCTCTTTATCCTCGGGTTTATCCTTGGTTCATTTTATTATACGGCCGGGTGCCGTATCCCCTTACATAT
ATCCTTTATCACGCCCCGTTCGGCATGCTCGTTTTGCCGGCGGACTTTAACCCCGGCAGAATTAATCCCCATCCTGTCAT
TCCTTTTCCAAAAAGGCAAATGTAAAAGCTGCGGGCACAGAATTTCTTTTATGTATCCTGTGGCAGAGCTTGTGACAGCG
TGTTTATTTGCGGCAGCAGGAATACGCTTTGGCCCGTCTCCGGAACTGTTTCCCGCTCTCGTGTTTATCTCTCTTCTCAT
CATCGTTGCAGTGACAGATATTCATTTTATGCTGATACCAAATCGGATATTAATTTTCTTTGTTCCCGTTCTAGCCGCTG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGCCGGCCTGTTAGGTGCGGCCGCCGGATTTCTATTCCTGGCCTTAATT
GCCGCAATCACCCATGGGGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTACTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAGCTGTCCTGACTGGAAGACACGCCA
AAAGACAGCCGCTTCCCTTTGCCCCCGCAATTGCTGCAGGGAGCATTTTAGCTTATTTATACGGTGACTCTATCATATCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

93.145

100

0.931