Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   U6I89_RS13225 Genome accession   NZ_CP141263
Coordinates   2625660..2626070 (-) Length   136 a.a.
NCBI ID   WP_003237136.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2620660..2631070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS13195 (U6I89_13195) - 2620915..2621046 (-) 132 WP_019258943.1 hypothetical protein -
  U6I89_RS13200 (U6I89_13200) - 2621122..2621853 (-) 732 WP_060399064.1 SGNH/GDSL hydrolase family protein -
  U6I89_RS13205 (U6I89_13205) - 2622106..2622858 (-) 753 WP_060399065.1 N-acetylmuramoyl-L-alanine amidase -
  U6I89_RS13210 (U6I89_13210) - 2623053..2623679 (+) 627 WP_060399066.1 TVP38/TMEM64 family protein -
  U6I89_RS13215 (U6I89_13215) gnd 2623698..2624591 (-) 894 WP_060399067.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  U6I89_RS13220 (U6I89_13220) - 2624905..2625627 (+) 723 WP_080429113.1 hypothetical protein -
  U6I89_RS13225 (U6I89_13225) nucA/comI 2625660..2626070 (-) 411 WP_003237136.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U6I89_RS13230 (U6I89_13230) sigK 2626265..2626993 (+) 729 WP_003237137.1 RNA polymerase sporulation sigma factor SigK -
  U6I89_RS21670 - 2627059..2627125 (+) 67 Protein_2558 hypothetical protein -
  U6I89_RS13240 (U6I89_13240) - 2627248..2627426 (-) 179 Protein_2559 hypothetical protein -
  U6I89_RS13250 (U6I89_13250) - 2628841..2630055 (-) 1215 WP_060399070.1 MFS transporter -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14992.02 Da        Isoelectric Point: 5.7516

>NTDB_id=916567 U6I89_RS13225 WP_003237136.1 2625660..2626070(-) (nucA/comI) [Bacillus inaquosorum strain BIM B-2002]
MKKWMAGLLLAAAVFLCLVVPQPIKSASLYDKVLYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSGYPDGTRVRFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=916567 U6I89_RS13225 WP_003237136.1 2625660..2626070(-) (nucA/comI) [Bacillus inaquosorum strain BIM B-2002]
ATGAAAAAATGGATGGCAGGCCTGCTTCTTGCTGCAGCAGTTTTTCTTTGTTTAGTGGTTCCGCAGCCGATCAAGAGCGC
TTCTTTGTATGACAAAGTGTTGTATTTTCCGCTGTCTCGTTATCCGGAAACAGGGGATCATATTAGAGATGCGATAGCAG
AGGGGCATTCTGATATTTGTACCATCGACAGGGATGGAGCGGACAAAAGGCGAGAGGAATCATTAAAAGGAATTCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCAATGGCGGTTTGCGAGGAAGGCGGCGCAGGAGCTGACGTCCGATATGTGAC
GCCTTCTGATAATCGCGGGGCCGGCTCGTGGGTAGGGAATCAAATGAGTGGTTATCCTGACGGCACCAGAGTGCGGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529