Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   U6I89_RS12970 Genome accession   NZ_CP141263
Coordinates   2582116..2582883 (-) Length   255 a.a.
NCBI ID   WP_060399045.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2577116..2587883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS12950 (U6I89_12950) - 2577289..2578101 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  U6I89_RS12955 (U6I89_12955) ccpN 2578127..2578765 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  U6I89_RS12960 (U6I89_12960) glyS 2578899..2580938 (-) 2040 WP_060399044.1 glycine--tRNA ligase subunit beta -
  U6I89_RS12965 (U6I89_12965) glyQ 2580931..2581818 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  U6I89_RS12970 (U6I89_12970) recO 2582116..2582883 (-) 768 WP_060399045.1 DNA repair protein RecO Machinery gene
  U6I89_RS12975 (U6I89_12975) - 2582920..2583063 (-) 144 WP_003230053.1 YqzL family protein -
  U6I89_RS12980 (U6I89_12980) era 2583207..2584112 (-) 906 WP_003226207.1 GTPase Era -
  U6I89_RS12985 (U6I89_12985) - 2584093..2584503 (-) 411 WP_060399046.1 cytidine deaminase -
  U6I89_RS12990 (U6I89_12990) - 2584624..2584995 (-) 372 WP_003237069.1 diacylglycerol kinase family protein -
  U6I89_RS12995 (U6I89_12995) ybeY 2584976..2585449 (-) 474 WP_003237071.1 rRNA maturation RNase YbeY -
  U6I89_RS13000 (U6I89_13000) pgpH 2585450..2587585 (-) 2136 WP_080429034.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29401.16 Da        Isoelectric Point: 8.5552

>NTDB_id=916563 U6I89_RS12970 WP_060399045.1 2582116..2582883(-) (recO) [Bacillus inaquosorum strain BIM B-2002]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESFKQLNEGTDPDVIIFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=916563 U6I89_RS12970 WP_060399045.1 2582116..2582883(-) (recO) [Bacillus inaquosorum strain BIM B-2002]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAACGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAAAAAACAACGGGCCTCGGAACGCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACCGCATATGCTGCGTATATTGCTGAGCTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAATTCATTTTAGAATCGTTTAAACAGCTGAATGAAGGAACAGATCCGGATGTCATCATCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCCGAGCTGAATCACTGTGTGCATTGTAAAAGCCAGGACGGG
ACATTTCATTTCTCTGTCCGTGATAACGGGTTTATTTGCCATCGTTGTTTTGAAAAAGATCCTTACAGGATTCCGATTAA
ACCGCAAACGGCAAGGCTGTTGAGGCTGTTTTATTACTTCGATCTGTCGAGGCTGGGCAATGTGTCCTTAAAACAGGAAA
CAAAAGCTGAATTGAAGCAAGTGATTGATTTATATTATGAGGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

98.039

100

0.98