Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCV30_RS12940 Genome accession   NZ_AP025460
Coordinates   2910899..2911879 (-) Length   326 a.a.
NCBI ID   WP_065678045.1    Uniprot ID   A0A1C3IGQ0
Organism   Vibrio atlanticus strain CECT 7223     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2905899..2916879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS12925 recA 2906399..2907439 (-) 1041 WP_009847633.1 recombinase RecA Machinery gene
  OCV30_RS12930 - 2907579..2908073 (-) 495 WP_029225457.1 CinA family protein -
  OCV30_RS12935 mutS 2908198..2910759 (+) 2562 WP_065678046.1 DNA mismatch repair protein MutS -
  OCV30_RS12940 rpoS 2910899..2911879 (-) 981 WP_065678045.1 RNA polymerase sigma factor RpoS Regulator
  OCV30_RS12945 nlpD 2911978..2912892 (-) 915 WP_029225456.1 murein hydrolase activator NlpD -
  OCV30_RS12950 - 2912928..2913554 (-) 627 WP_009847638.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCV30_RS12955 surE 2913555..2914298 (-) 744 WP_065678044.1 5'/3'-nucleotidase SurE -
  OCV30_RS12960 truD 2914397..2915443 (-) 1047 WP_029223074.1 tRNA pseudouridine(13) synthase TruD -
  OCV30_RS12965 ispF 2915466..2915945 (-) 480 WP_029223073.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCV30_RS12970 ispD 2915948..2916649 (-) 702 WP_009847642.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37235.46 Da        Isoelectric Point: 5.6640

>NTDB_id=91656 OCV30_RS12940 WP_065678045.1 2910899..2911879(-) (rpoS) [Vibrio atlanticus strain CECT 7223]
MSISNAVTKKEFDLNQATTEQEALGKAKRTVTKKTEAKEDTEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=91656 OCV30_RS12940 WP_065678045.1 2910899..2911879(-) (rpoS) [Vibrio atlanticus strain CECT 7223]
ATGAGTATAAGCAATGCAGTAACCAAAAAAGAGTTCGATCTTAACCAAGCAACCACGGAACAGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGATACTGAAGTTACGTCTAAAAGCTTAGATGCGACTCAACTCT
ACTTAGGCGAAATCGGTTTCTCACCACTATTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGTCT
TGCACTTCTCGATCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGTGGCTTCC
GTTTCTCAACTTACGCAACATGGTGGATTCGTCAAACCATTGAACGTGCGCTAATGAATCAGACTCGCACTATCCGTTTG
CCTATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACCGCAAGAGAACTTTCACAAAAACTTGACCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGACAAACCTGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAACGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGATGGTGAGAAAGCGCTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAATTCGTTGATCTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGATTACTTGGCTATGAACCATCAACACTAGAAGAAGTAGGCCGTGAAATTAGCCTGACTCGTGAAC
GTGTTCGCCAAATCCAAGTTGAAGGTCTTCGTCGTTTACGTGAAATTCTAATCAAGCAAGGCTTGAACATGGAAAATCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3IGQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

80.539

100

0.825

Multiple sequence alignment