Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   U6I89_RS12445 Genome accession   NZ_CP141263
Coordinates   2494470..2496200 (-) Length   576 a.a.
NCBI ID   WP_060398997.1    Uniprot ID   A0A9Q4HTQ2
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2489470..2501200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS12420 (U6I89_12420) - 2490055..2490189 (+) 135 WP_060398994.1 hypothetical protein -
  U6I89_RS12425 (U6I89_12425) - 2490262..2491380 (+) 1119 WP_060398995.1 NADH-dependent flavin oxidoreductase -
  U6I89_RS12430 (U6I89_12430) - 2491614..2491793 (-) 180 WP_060398996.1 hypothetical protein -
  U6I89_RS12435 (U6I89_12435) spo0A 2491935..2492738 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  U6I89_RS12440 (U6I89_12440) spoIVB 2493014..2494294 (-) 1281 WP_003236887.1 SpoIVB peptidase -
  U6I89_RS12445 (U6I89_12445) recN 2494470..2496200 (-) 1731 WP_060398997.1 DNA repair protein RecN Machinery gene
  U6I89_RS12450 (U6I89_12450) argR 2496236..2496685 (-) 450 WP_003236889.1 arginine repressor ArgR -
  U6I89_RS12455 (U6I89_12455) - 2496783..2497628 (-) 846 WP_060398998.1 TlyA family RNA methyltransferase -
  U6I89_RS12460 (U6I89_12460) dxs 2497625..2499526 (-) 1902 WP_060398999.1 1-deoxy-D-xylulose-5-phosphate synthase -
  U6I89_RS12465 (U6I89_12465) - 2499707..2500597 (-) 891 WP_060399000.1 polyprenyl synthetase family protein -
  U6I89_RS12470 (U6I89_12470) - 2500587..2500841 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64579.35 Da        Isoelectric Point: 4.7094

>NTDB_id=916553 U6I89_RS12445 WP_060398997.1 2494470..2496200(-) (recN) [Bacillus inaquosorum strain BIM B-2002]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVFDIC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGASV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPIVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTHVKPLSKQEKVVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=916553 U6I89_RS12445 WP_060398997.1 2494470..2496200(-) (recN) [Bacillus inaquosorum strain BIM B-2002]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGAGGATCATCTGAAT
TTGTCAGATATGGAGAAGCAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCCGTTTTTGATATATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTTATGAGAAGGGATATCAGCACGAGTGGAAAAAGCGTTTGCCG
GGTTAATGGCAAGCTTGTCACGATTGCCTCGTTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGAGCCGAAGTGGAAAGTGCGCTCCAA
GCATATCAGGAAGGATACCAGCGTTACATGAAGCTGCTTAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGCCTTGATCTCATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAATGAAGATGAACAGCTTC
AAGAAGAACGCCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAACGCGTATAACGCGCTTCGCAGTGAG
CAAGGCGGGCTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATATCCGATATTAATGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATCTTCTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGACGAGCTTGAGT
ATGATCCGGAACGCCTGAATTATATTGAAACACGTCTTAATGAAATCAAACAGCTGAAACGAAAATATGGTGCATCTGTT
GAAGATATTTTAGAATACGCTTCTAAAATTGAAGAAGAGATAGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTTTCACAAATCAGGAAAGCATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAGTCAACGTTTGATACGGAATTTAAGGTC
AGAACAGCGTCCCGCAATGAGGAGGCGCCGATTGTAAACGGCCAGCCTGTTCAGCTGACTGAACAAGGGATAGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGTGAACCGCTAAAATCTCTTTCGAAAGTCGCTTCCGGGGGAGAGTTGTCTCGGG
TAATGCTTGCCATAAAAAGCATTTTTTCCTCTCAGCAGGATGTGACGTCGATTATATTCGATGAGGTCGATACCGGTGTA
AGCGGCAGAGTCGCCCAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCACAAGTGCTGTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATACGCACCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACATGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGTGGAAATCGGGCGCATGATTGCAGGAGTCGAAGTAACAGACTTGACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.743

100

0.977