Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   U6I89_RS11440 Genome accession   NZ_CP141263
Coordinates   2314543..2315163 (+) Length   206 a.a.
NCBI ID   WP_004398007.1    Uniprot ID   A0A9W5LEN4
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2309543..2320163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS11400 (U6I89_11400) - 2310683..2311189 (-) 507 WP_060400036.1 PTS glucose transporter subunit IIA -
  U6I89_RS11405 (U6I89_11405) - 2311327..2311746 (+) 420 WP_060398885.1 Hsp20/alpha crystallin family protein -
  U6I89_RS11410 (U6I89_11410) - 2311767..2312135 (-) 369 WP_060398886.1 YppG family protein -
  U6I89_RS11415 (U6I89_11415) - 2312322..2312510 (+) 189 WP_060398887.1 YppF family protein -
  U6I89_RS11420 (U6I89_11420) - 2312549..2312920 (-) 372 WP_060398888.1 YppE family protein -
  U6I89_RS11425 (U6I89_11425) - 2312966..2313211 (-) 246 WP_060398889.1 DUF5446 family protein -
  U6I89_RS11430 (U6I89_11430) sspM 2313410..2313514 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  U6I89_RS11435 (U6I89_11435) - 2313540..2314502 (-) 963 WP_004398006.1 DUF2515 domain-containing protein -
  U6I89_RS11440 (U6I89_11440) recU 2314543..2315163 (+) 621 WP_004398007.1 Holliday junction resolvase RecU Machinery gene
  U6I89_RS11445 (U6I89_11445) - 2315186..2317939 (+) 2754 WP_060398890.1 transglycosylase domain-containing protein -
  U6I89_RS11450 (U6I89_11450) - 2318011..2318505 (-) 495 WP_004398011.1 YpoC family protein -
  U6I89_RS11455 (U6I89_11455) nth 2318502..2319161 (-) 660 WP_003225594.1 endonuclease III -
  U6I89_RS11460 (U6I89_11460) dnaD 2319180..2319878 (-) 699 WP_004398016.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=916551 U6I89_RS11440 WP_004398007.1 2314543..2315163(+) (recU) [Bacillus inaquosorum strain BIM B-2002]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=916551 U6I89_RS11440 WP_004398007.1 2314543..2315163(+) (recU) [Bacillus inaquosorum strain BIM B-2002]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTCA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTATAACGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTCTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTAGAGGAAGCTGCGTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCTTCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.029

100

0.99