Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   U6I89_RS08035 Genome accession   NZ_CP141263
Coordinates   1625602..1625880 (+) Length   92 a.a.
NCBI ID   WP_003238863.1    Uniprot ID   A0A9Q4EYY4
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1620602..1630880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS08015 (U6I89_08015) - 1621793..1622704 (+) 912 WP_060398538.1 ketopantoate reductase family protein -
  U6I89_RS08020 (U6I89_08020) - 1622733..1623965 (-) 1233 WP_060398539.1 aminopeptidase -
  U6I89_RS08025 (U6I89_08025) - 1624077..1624211 (-) 135 WP_003238865.1 protein YkpC -
  U6I89_RS08030 (U6I89_08030) mreBH 1624312..1625319 (-) 1008 WP_029316824.1 cell shape-determining protein MreBH -
  U6I89_RS08035 (U6I89_08035) abrB 1625602..1625880 (+) 279 WP_003238863.1 transcriptional regulator AbhA Regulator
  U6I89_RS08040 (U6I89_08040) kinC 1626073..1627359 (+) 1287 WP_060398540.1 two-component sensor histidine kinase KinC -
  U6I89_RS08045 (U6I89_08045) - 1627375..1628202 (+) 828 WP_060398541.1 gamma-glutamylcyclotransferase -
  U6I89_RS08050 (U6I89_08050) ktrC 1628274..1628939 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  U6I89_RS08055 (U6I89_08055) ade 1629097..1630830 (+) 1734 WP_060398542.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=916546 U6I89_RS08035 WP_003238863.1 1625602..1625880(+) (abrB) [Bacillus inaquosorum strain BIM B-2002]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSDNKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=916546 U6I89_RS08035 WP_003238863.1 1625602..1625880(+) (abrB) [Bacillus inaquosorum strain BIM B-2002]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAATTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGTATTGAATTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGTGTTT
GTTTAATGACCGGAGAAATCACTTCAGATAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCAGAAGGTGCACAG
CTGCTTCTTGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587