Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   U6I89_RS06470 Genome accession   NZ_CP141263
Coordinates   1344288..1345409 (+) Length   373 a.a.
NCBI ID   WP_248596975.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1339288..1350409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS06440 (U6I89_06440) - 1339919..1341136 (+) 1218 WP_080428989.1 MFS transporter -
  U6I89_RS06445 (U6I89_06445) - 1341311..1341889 (+) 579 WP_003239283.1 GNAT family N-acetyltransferase -
  U6I89_RS06450 (U6I89_06450) spx 1342070..1342465 (+) 396 WP_003239281.1 transcriptional regulator Spx -
  U6I89_RS06455 (U6I89_06455) - 1342508..1343164 (-) 657 WP_019258060.1 TerC family protein -
  U6I89_RS06460 (U6I89_06460) - 1343349..1343474 (+) 126 WP_119913679.1 hypothetical protein -
  U6I89_RS06465 (U6I89_06465) mecA 1343441..1344097 (+) 657 WP_060398378.1 adaptor protein MecA Regulator
  U6I89_RS21625 - 1344102..1344165 (-) 64 Protein_1208 hypothetical protein -
  U6I89_RS06470 (U6I89_06470) coiA 1344288..1345409 (+) 1122 WP_248596975.1 competence protein CoiA family protein Machinery gene
  U6I89_RS06475 (U6I89_06475) pepF 1345639..1347468 (+) 1830 WP_166638382.1 oligoendopeptidase F -
  U6I89_RS06480 (U6I89_06480) - 1347507..1347674 (-) 168 WP_032732134.1 hypothetical protein -
  U6I89_RS06485 (U6I89_06485) spxH 1347988..1348887 (-) 900 WP_060398380.1 protease adaptor protein SpxH -
  U6I89_RS06490 (U6I89_06490) - 1348884..1349282 (-) 399 WP_003239269.1 thiol management oxidoreductase component -
  U6I89_RS06495 (U6I89_06495) - 1349538..1350275 (-) 738 WP_060398381.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43924.16 Da        Isoelectric Point: 9.9271

>NTDB_id=916540 U6I89_RS06470 WP_248596975.1 1344288..1345409(+) (coiA) [Bacillus inaquosorum strain BIM B-2002]
MVHLLGAQRSQKLKQRRFFCPACGGELDVKLGLQKAPHFAHKQNKCCSIDIEPESAYHLEGKRQLYVWLKTQQASPLLEP
YIKKINQRPDIMAKIKRHMLAVEYQCANLAPDVFQKRTEGFKQEGIIPQWIVGNSRLKRTAPSFYQLSAFHWQFINASPY
RELICYCPETRSFRRLSHIIPFYTNHSYSFVQTIPIHRAGVKDLFFTEPMPSFQYSGWTKAIHRFRHKPHRFISKETNRL
RLLFYEKRQTPLSFLPTEVFVPVIKGAVFHSPVFVWQGFLYLFITDLGYKGAPIRFSAVLQQCKLHIYKKNISLRYECSE
DCLSEAVKQYIDFLCKKGFLRETQKEIYVLNQPKEGIHSIQDLMERDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=916540 U6I89_RS06470 WP_248596975.1 1344288..1345409(+) (coiA) [Bacillus inaquosorum strain BIM B-2002]
ATGGTTCACCTTCTAGGCGCTCAGCGAAGCCAGAAATTAAAGCAGAGACGATTCTTCTGTCCGGCGTGCGGGGGAGAGCT
TGATGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTCGCCCATAAACAGAACAAGTGCTGCTCGATAGACATAGAACCGG
AAAGCGCCTATCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAAACGCAACAGGCTTCTCCACTATTAGAACCG
TATATCAAGAAAATCAATCAAAGACCCGACATCATGGCGAAGATCAAGAGACACATGCTTGCTGTTGAGTATCAATGTGC
CAATCTTGCTCCCGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAGAAGGAATCATCCCACAGTGGATTGTGGGAA
ACAGCCGCTTAAAACGAACTGCTCCATCCTTTTATCAGCTTTCTGCTTTCCATTGGCAGTTTATCAATGCGAGCCCATAC
AGGGAACTGATCTGTTATTGCCCGGAAACGCGTTCTTTCCGCCGGCTAAGCCATATCATCCCGTTTTACACAAACCATTC
TTATTCCTTCGTTCAAACGATCCCTATCCATCGGGCAGGTGTAAAAGATCTTTTTTTCACTGAACCGATGCCCTCATTTC
AATACTCCGGCTGGACAAAAGCGATTCACCGTTTTCGCCATAAACCCCACCGGTTCATCTCCAAGGAAACAAATCGCCTC
AGGCTGCTGTTTTATGAAAAGCGGCAGACGCCCCTTTCTTTTCTTCCGACTGAAGTGTTTGTTCCTGTTATAAAAGGGGC
TGTTTTTCATAGTCCGGTTTTTGTGTGGCAGGGGTTTCTATATCTGTTTATTACGGATCTTGGATATAAAGGCGCGCCAA
TTCGCTTTTCCGCCGTTTTACAGCAGTGCAAACTGCACATTTATAAAAAGAACATTTCGCTCAGATACGAATGCAGCGAA
GATTGTCTTTCAGAAGCGGTGAAACAGTACATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAAT
ATATGTGCTGAATCAGCCTAAAGAGGGTATACACTCAATACAGGATCTCATGGAAAGAGACCGCAGCTGTTTTATAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

87.936

100

0.879