Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   U6I89_RS06350 Genome accession   NZ_CP141263
Coordinates   1321011..1321964 (+) Length   317 a.a.
NCBI ID   WP_019258048.1    Uniprot ID   A0A9Q4EVQ8
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1316011..1326964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS06325 (U6I89_06325) argF 1317839..1318799 (+) 961 Protein_1179 ornithine carbamoyltransferase -
  U6I89_RS06330 (U6I89_06330) - 1318885..1319064 (+) 180 WP_003239319.1 YjzC family protein -
  U6I89_RS06335 (U6I89_06335) - 1319110..1319295 (-) 186 WP_003224551.1 YjzD family protein -
  U6I89_RS06340 (U6I89_06340) - 1319547..1320281 (+) 735 WP_003239317.1 hypothetical protein -
  U6I89_RS06345 (U6I89_06345) - 1320363..1320920 (+) 558 WP_060398368.1 hypothetical protein -
  U6I89_RS06350 (U6I89_06350) med 1321011..1321964 (+) 954 WP_019258048.1 transcriptional regulator Med Regulator
  U6I89_RS06355 (U6I89_06355) comZ 1321979..1322170 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  U6I89_RS06360 (U6I89_06360) - 1322200..1322427 (-) 228 WP_080010764.1 hypothetical protein -
  U6I89_RS06365 (U6I89_06365) fabH 1322591..1323529 (+) 939 WP_060398369.1 beta-ketoacyl-ACP synthase III -
  U6I89_RS06370 (U6I89_06370) fabF 1323552..1324793 (+) 1242 WP_060398370.1 beta-ketoacyl-ACP synthase II -
  U6I89_RS06375 (U6I89_06375) - 1324870..1325655 (+) 786 WP_060398371.1 DUF2268 domain-containing protein -
  U6I89_RS06380 (U6I89_06380) appD 1325844..1326830 (+) 987 WP_060398372.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35313.80 Da        Isoelectric Point: 4.5558

>NTDB_id=916535 U6I89_RS06350 WP_019258048.1 1321011..1321964(+) (med) [Bacillus inaquosorum strain BIM B-2002]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVSEDYPDMEFVISNAEAKGDNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDSTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLKTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=916535 U6I89_RS06350 WP_019258048.1 1321011..1321964(+) (med) [Bacillus inaquosorum strain BIM B-2002]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCAAAATACAATGTGGACGTCTACTATAAAGAAGGCGTTAAAACAGATGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGCGGGGCGTTAACCTTCTCTATGGCCATGGAAGTGAATATGCAGAGGTATTTAACTTGGTCAGCGAAGATTA
TCCAGATATGGAATTTGTCATTTCTAATGCGGAAGCGAAAGGTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAA
TGGGCTTTTTTGGAGGAATGACAGCTGCCCATATGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAG
CCAGAGGTTGACGGTTTTATCAAAGGTGCCAAATATGAAAACCCTGATATAGAAGTAAACACGAAATATACGGATCATTG
GGATGATGATTCGACAGCAGTGAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTTTATGCCATCGGCTATGTCACAGATCAATCAGATCTC
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATCGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGAGATCATTACTACGACCTGAAAACGGGAGTTGTTGAAATGGGAACATTCAGTCCGCTTGTCGATA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGAACTGCCAAAAAATGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

97.792

100

0.978