Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   U6I89_RS05920 Genome accession   NZ_CP141263
Coordinates   1237940..1238518 (+) Length   192 a.a.
NCBI ID   WP_060398318.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232940..1243518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS21615 - 1233451..1233966 (-) 516 WP_373695039.1 methyl-accepting chemotaxis protein -
  U6I89_RS21620 - 1234255..1234875 (-) 621 Protein_1094 protoglobin domain-containing protein -
  U6I89_RS05905 (U6I89_05905) - 1234889..1236418 (-) 1530 WP_060398317.1 FAD-dependent oxidoreductase -
  U6I89_RS05910 (U6I89_05910) - 1236530..1237387 (+) 858 WP_003239442.1 SDR family oxidoreductase -
  U6I89_RS05915 (U6I89_05915) - 1237414..1237647 (-) 234 WP_003239440.1 IDEAL domain-containing protein -
  U6I89_RS05920 (U6I89_05920) comK 1237940..1238518 (+) 579 WP_060398318.1 competence transcription factor ComK Regulator
  U6I89_RS05925 (U6I89_05925) - 1238564..1239463 (-) 900 WP_060398319.1 SDR family oxidoreductase -
  U6I89_RS05930 (U6I89_05930) - 1239671..1239940 (+) 270 WP_019713871.1 excalibur calcium-binding domain-containing protein -
  U6I89_RS05935 (U6I89_05935) - 1239983..1241452 (-) 1470 WP_003239433.1 sodium:solute symporter -
  U6I89_RS05940 (U6I89_05940) - 1241449..1241649 (-) 201 WP_019257983.1 DUF3311 domain-containing protein -
  U6I89_RS05945 (U6I89_05945) - 1241867..1242229 (-) 363 WP_003239431.1 hypothetical protein -
  U6I89_RS05950 (U6I89_05950) - 1242383..1243006 (+) 624 WP_003239430.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22499.77 Da        Isoelectric Point: 7.7153

>NTDB_id=916532 U6I89_RS05920 WP_060398318.1 1237940..1238518(+) (comK) [Bacillus inaquosorum strain BIM B-2002]
MSQKTDAPLESYEVNNATIAVLPEEIDGKIYSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=916532 U6I89_RS05920 WP_060398318.1 1237940..1238518(+) (comK) [Bacillus inaquosorum strain BIM B-2002]
ATGAGTCAGAAAACTGACGCACCTTTAGAATCGTATGAAGTAAACAACGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATCTATTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGATAGAA
GCTGCCGGTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAACGGCAAAACGATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAAAACCAGGTTTACCGGACAGCATGGCTCAGAACCAAATTCCAGGACAGAATCGAACAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969