Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV30_RS12760 Genome accession   NZ_AP025460
Coordinates   2874718..2875236 (-) Length   172 a.a.
NCBI ID   WP_009847612.1    Uniprot ID   A0A2N7NI37
Organism   Vibrio atlanticus strain CECT 7223     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2869718..2880236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS12735 rimM 2869727..2870281 (-) 555 WP_065678059.1 ribosome maturation factor RimM -
  OCV30_RS12740 rpsP 2870308..2870556 (-) 249 WP_004735508.1 30S ribosomal protein S16 -
  OCV30_RS12745 ffh 2870769..2872163 (-) 1395 WP_004735506.1 signal recognition particle protein -
  OCV30_RS12750 - 2872364..2873158 (+) 795 WP_065678058.1 cytochrome C assembly family protein -
  OCV30_RS12755 - 2873286..2874557 (+) 1272 WP_009847611.1 HlyC/CorC family transporter -
  OCV30_RS12760 luxS 2874718..2875236 (-) 519 WP_009847612.1 S-ribosylhomocysteine lyase Regulator
  OCV30_RS12765 - 2875261..2875911 (-) 651 WP_083994557.1 hypothetical protein -
  OCV30_RS12770 gshA 2875922..2877490 (-) 1569 WP_009847614.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18958.71 Da        Isoelectric Point: 4.6963

>NTDB_id=91653 OCV30_RS12760 WP_009847612.1 2874718..2875236(-) (luxS) [Vibrio atlanticus strain CECT 7223]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRAHLNGSAVEIIDISP
MGCRTGFYMSLIGTPSEQQVAEAWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIATGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91653 OCV30_RS12760 WP_009847612.1 2874718..2875236(-) (luxS) [Vibrio atlanticus strain CECT 7223]
ATGCCTTTATTAGATAGTTTTACTGTTGATCACACGCGCATGAACGCACCTGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATTACGGTATTTGACCTGCGTTTTACTGCACCAAACAAAGATATCCTATCTGAGAGAGGTATTC
ATACTCTCGAGCACCTATACGCTGGGTTCATGCGTGCTCACCTCAATGGCTCTGCGGTTGAGATCATTGATATTTCGCCT
ATGGGTTGTCGTACCGGTTTCTATATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGAAGCTTGGTTAGCGGC
TATGCAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGTTGAACGAATACCAGTGTGGTACTGCGGCAATGC
ATTCCTTAGATGAAGCTAAAGAGATTGCGAATGCAATCATCGCTACCGGTATTTCAGTAAACAAAAATGATGAACTGGCA
TTGCCAGAGTCGATGCTTCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7NI37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment