Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   U6I89_RS00020 Genome accession   NZ_CP141263
Coordinates   3555..4667 (+) Length   370 a.a.
NCBI ID   WP_019257226.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS00005 (U6I89_00005) dnaA 527..1867 (+) 1341 WP_003236652.1 chromosomal replication initiator protein DnaA -
  U6I89_RS00010 (U6I89_00010) dnaN 2056..3192 (+) 1137 WP_003236654.1 DNA polymerase III subunit beta -
  U6I89_RS00015 (U6I89_00015) rlbA 3324..3539 (+) 216 WP_003236655.1 ribosome maturation protein RlbA -
  U6I89_RS00020 (U6I89_00020) recF 3555..4667 (+) 1113 WP_019257226.1 DNA replication/repair protein RecF Machinery gene
  U6I89_RS00025 (U6I89_00025) remB 4685..4930 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  U6I89_RS00030 (U6I89_00030) gyrB 4984..6900 (+) 1917 WP_003236659.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  U6I89_RS00035 (U6I89_00035) gyrA 7110..9575 (+) 2466 WP_019257227.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42360.36 Da        Isoelectric Point: 7.0881

>NTDB_id=916515 U6I89_RS00020 WP_019257226.1 3555..4667(+) (recF) [Bacillus inaquosorum strain BIM B-2002]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=916515 U6I89_RS00020 WP_019257226.1 3555..4667(+) (recF) [Bacillus inaquosorum strain BIM B-2002]
TTGTATATCCAGAACTTAGAGCTGACATCTTACCGCAACTACGACCATGCCGAACTGCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAAACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATCATGTTTGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCTGTTTACCTGTATGACCTTTCTCTTTACCAGAAAATCCTTTCTCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTGACCGATCAGCTTGTGGA
AGTTGCGGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAAAAATGGGCGCAGCCAATTCATGCGGGCA
TCTCAAGAGGGTTAGAAGAGCTGACCCTAAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGTGTTACGCTGTCAGGGCCTCATCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCATTGT
CCCTTAAGCTGGCGGAAATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.189

100

0.992