Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   AB0T70_RS02970 Genome accession   NZ_CP160032
Coordinates   616358..616873 (-) Length   171 a.a.
NCBI ID   WP_000477149.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB44-AUFP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 611358..621873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0T70_RS02945 (AB0T70_02945) - 611904..613547 (+) 1644 WP_002157337.1 nitrite/sulfite reductase -
  AB0T70_RS02950 (AB0T70_02950) - 613540..614025 (+) 486 WP_002157350.1 DUF934 domain-containing protein -
  AB0T70_RS02955 (AB0T70_02955) - 614108..614461 (+) 354 WP_000457783.1 SMR family transporter -
  AB0T70_RS02960 (AB0T70_02960) - 614504..614947 (-) 444 WP_001176580.1 VOC family protein -
  AB0T70_RS02965 (AB0T70_02965) - 615074..616249 (-) 1176 WP_002157343.1 thiolase family protein -
  AB0T70_RS02970 (AB0T70_02970) fimT 616358..616873 (-) 516 WP_000477149.1 GspH/FimT family pseudopilin Machinery gene
  AB0T70_RS02975 (AB0T70_02975) omp38 617255..618325 (+) 1071 WP_000777877.1 outer membrane protein Omp38 -
  AB0T70_RS02980 (AB0T70_02980) - 618450..618593 (-) 144 WP_162138624.1 hypothetical protein -
  AB0T70_RS02985 (AB0T70_02985) - 618612..619817 (-) 1206 WP_002157334.1 RtcB family protein -
  AB0T70_RS02990 (AB0T70_02990) - 620095..621555 (-) 1461 WP_002157309.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19633.88 Da        Isoelectric Point: 8.8196

>NTDB_id=916513 AB0T70_RS02970 WP_000477149.1 616358..616873(-) (fimT) [Acinetobacter baumannii strain AB44-AUFP]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=916513 AB0T70_RS02970 WP_000477149.1 616358..616873(-) (fimT) [Acinetobacter baumannii strain AB44-AUFP]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427