Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   U6N30_RS30660 Genome accession   NZ_CP141261
Coordinates   4563120..4563362 (+) Length   80 a.a.
NCBI ID   WP_324275248.1    Uniprot ID   -
Organism   Blastococcus brunescens strain BMG 8361     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4558120..4568362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6N30_RS30630 (U6N30_30630) - 4558669..4559571 (+) 903 WP_324275242.1 haloalkane dehalogenase -
  U6N30_RS30635 (U6N30_30635) - 4559568..4560005 (+) 438 WP_324275243.1 hypothetical protein -
  U6N30_RS30640 (U6N30_30640) - 4559906..4560691 (+) 786 WP_324275244.1 methyltransferase -
  U6N30_RS30645 (U6N30_30645) - 4560815..4561210 (+) 396 WP_324275245.1 hypothetical protein -
  U6N30_RS30650 (U6N30_30650) - 4561096..4561887 (+) 792 WP_324275246.1 class I SAM-dependent methyltransferase -
  U6N30_RS30655 (U6N30_30655) - 4561897..4563132 (+) 1236 WP_324275247.1 methyl-accepting chemotaxis protein -
  U6N30_RS30660 (U6N30_30660) pilJ 4563120..4563362 (+) 243 WP_324275248.1 methyl-accepting chemotaxis protein Machinery gene
  U6N30_RS30665 (U6N30_30665) - 4563425..4563604 (+) 180 WP_324275249.1 hypothetical protein -
  U6N30_RS30670 (U6N30_30670) - 4563772..4564245 (+) 474 WP_324275250.1 hypothetical protein -
  U6N30_RS30675 (U6N30_30675) - 4564248..4564661 (-) 414 WP_324278551.1 hypothetical protein -
  U6N30_RS30680 (U6N30_30680) pucL 4564622..4565161 (-) 540 WP_324275251.1 factor-independent urate hydroxylase -
  U6N30_RS30685 (U6N30_30685) uraH 4565218..4565535 (-) 318 WP_324275252.1 hydroxyisourate hydrolase -
  U6N30_RS30690 (U6N30_30690) uraD 4565532..4566029 (-) 498 WP_324275253.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase -
  U6N30_RS30695 (U6N30_30695) - 4566074..4566205 (+) 132 Protein_6076 hypothetical protein -
  U6N30_RS30700 (U6N30_30700) - 4566283..4567643 (+) 1361 Protein_6077 hypothetical protein -
  U6N30_RS30705 (U6N30_30705) - 4567891..4568169 (+) 279 WP_324275254.1 hypothetical protein -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 8452.55 Da        Isoelectric Point: 10.2981

>NTDB_id=916493 U6N30_RS30660 WP_324275248.1 4563120..4563362(+) (pilJ) [Blastococcus brunescens strain BMG 8361]
MVKVITSIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKELAQETAKATQDITARVLAIQNDTEGRSRRSARSPRSSV

Nucleotide


Download         Length: 243 bp        

>NTDB_id=916493 U6N30_RS30660 WP_324275248.1 4563120..4563362(+) (pilJ) [Blastococcus brunescens strain BMG 8361]
GTGGTCAAGGTGATCACGAGCATCGCGGAGCAGACCAACCTGCTGGCGCTCAACGCCACCATCGAAGCGGCGCGTGCCGG
CGAGGCGGGCAAGGGCTTCGCCGTCGTCGCCAACGAGGTCAAGGAACTGGCCCAGGAGACGGCGAAGGCGACGCAGGACA
TCACGGCGCGGGTGCTGGCCATCCAGAACGACACCGAGGGGCGGTCCAGGCGATCGGCGAGATCTCCTCGATCATCGGTC
TGA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(2-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

60

81.25

0.488