Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   U5817_RS14635 Genome accession   NZ_CP141259
Coordinates   3117983..3119356 (-) Length   457 a.a.
NCBI ID   WP_169125366.1    Uniprot ID   -
Organism   Aromatoleum evansii strain MAY27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3112983..3124356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5817_RS14615 (U5817_14570) - 3114061..3114762 (-) 702 WP_407281076.1 ABC transporter ATP-binding protein -
  U5817_RS14620 (U5817_14575) - 3114770..3115963 (-) 1194 WP_169125363.1 ABC transporter permease -
  U5817_RS14625 (U5817_14580) - 3115960..3117144 (-) 1185 WP_407277816.1 efflux RND transporter periplasmic adaptor subunit -
  U5817_RS14630 (U5817_14585) - 3117141..3117752 (-) 612 WP_169125365.1 TetR/AcrR family transcriptional regulator -
  U5817_RS14635 (U5817_14590) radA 3117983..3119356 (-) 1374 WP_169125366.1 DNA repair protein RadA Machinery gene
  U5817_RS14640 (U5817_14595) - 3119356..3120273 (-) 918 WP_407277817.1 LysR substrate-binding domain-containing protein -
  U5817_RS14645 (U5817_14600) lplT 3120452..3121705 (+) 1254 WP_169125368.1 lysophospholipid transporter LplT -
  U5817_RS14650 (U5817_14605) - 3121745..3122626 (-) 882 WP_407281077.1 uracil-DNA glycosylase family protein -
  U5817_RS14655 (U5817_14610) rimI 3122659..3123084 (-) 426 WP_169125492.1 ribosomal protein S18-alanine N-acetyltransferase -
  U5817_RS14660 (U5817_14615) tsaB 3123108..3123800 (-) 693 WP_169125369.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  U5817_RS14665 (U5817_14620) - 3123885..3124172 (-) 288 WP_169125370.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48526.86 Da        Isoelectric Point: 7.3506

>NTDB_id=916472 U5817_RS14635 WP_169125366.1 3117983..3119356(-) (radA) [Aromatoleum evansii strain MAY27]
MAKAKTSFVCSECGGQAPRWQGQCPQCKGWNTLVETVIEATAPGSSRFAALAGTTGRLQSLAELEPREEPRTPTGIEEFD
RVLGGGLVSGGVVLIGGDPGIGKSTLLLQALSALATQQAAIYVSGEESGEQVALRAQRLQLDPAGLKLLPEINLERILAT
LKESKPRIAVIDSIQTVYSEALQSAPGSVAQVRECAAQLTRFAKQSGTSLIMVGHVTKDGTLAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVSNPSAIFLSQHSQQVAGSCVLVTQEGTRPLLVEIQALVDGAHSPN
PRRLSVGLEQNRLAMLLAVLHRHAGVVCFDQDVFVNAVGGVKIAEPAADLAVLLAIVSSLRSRALPRELVVFGEVGLAGE
IRPAPRGQERLKEAAKLGFTVAIIPKANAPKQAIAGMRVIAVDRIEEAIEQAREIEA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=916472 U5817_RS14635 WP_169125366.1 3117983..3119356(-) (radA) [Aromatoleum evansii strain MAY27]
ATGGCGAAGGCGAAGACGAGCTTCGTCTGCAGCGAGTGCGGGGGGCAGGCGCCGCGCTGGCAGGGCCAGTGTCCGCAGTG
CAAGGGCTGGAACACGCTGGTCGAGACAGTGATCGAGGCGACGGCGCCGGGCAGCAGCCGGTTCGCGGCCTTGGCCGGCA
CGACGGGCAGGCTGCAGTCGCTCGCGGAGCTGGAGCCGCGCGAGGAGCCGCGCACGCCGACGGGGATCGAGGAATTCGAC
CGCGTGCTCGGCGGCGGCCTGGTTTCCGGTGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCT
GCTGCAGGCGCTGTCGGCGCTCGCGACGCAGCAGGCGGCGATCTATGTGAGTGGCGAGGAGTCGGGCGAGCAGGTGGCGC
TGCGGGCGCAGCGCCTGCAGCTCGATCCGGCGGGGCTGAAGCTGCTGCCGGAGATCAATCTCGAACGCATCCTCGCGACG
CTGAAGGAGTCGAAGCCGCGCATCGCGGTGATCGACTCGATCCAGACGGTGTATTCGGAGGCGCTGCAGTCGGCGCCGGG
TTCGGTCGCGCAGGTGCGCGAGTGTGCGGCGCAGCTCACGCGCTTCGCGAAGCAGAGCGGCACGAGCCTGATCATGGTCG
GCCACGTGACCAAGGACGGCACGCTCGCGGGGCCGCGCGTGCTGGAGCACATCGTCGATACGGTGCTGTACTTCGAGGGG
GATACGCATTCGAGCTTCCGCCTCGTGCGCGCGTTCAAGAACCGCTTTGGCGCGGTGAACGAGCTGGGCGTGTTCGCGAT
GACGGAGCGCGGCCTGCGCGGCGTGAGCAATCCGTCGGCGATCTTCCTGTCGCAGCACAGCCAGCAGGTGGCGGGCAGCT
GCGTGCTGGTGACGCAGGAGGGTACGCGGCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGACGGCGCGCACAGCCCGAAT
CCGCGCCGCCTGTCGGTGGGACTCGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCATCGCCATGCGGGCGTGGT
GTGCTTCGACCAGGACGTGTTCGTGAATGCGGTGGGCGGCGTGAAGATCGCCGAACCGGCGGCGGACCTCGCGGTGCTGC
TGGCGATCGTGTCGTCCTTGCGCAGCCGGGCGCTGCCGCGCGAGCTGGTGGTGTTCGGCGAGGTGGGCCTGGCGGGCGAG
ATCCGGCCTGCGCCGCGCGGGCAGGAGCGCCTAAAGGAGGCGGCGAAACTCGGCTTCACGGTCGCAATCATCCCGAAGGC
CAATGCGCCCAAGCAGGCGATCGCCGGCATGCGGGTGATTGCGGTGGACCGGATCGAGGAAGCGATCGAACAGGCGCGCG
AGATCGAAGCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.492
  radA Streptococcus mitis SK321

46.507

100

0.466
  radA Streptococcus pneumoniae D39

46.608

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.608

100

0.466
  radA Streptococcus pneumoniae R6

46.608

100

0.466
  radA Streptococcus pneumoniae Rx1

46.608

100

0.466
  radA Streptococcus mitis NCTC 12261

46.389

100

0.464