Detailed information NTG0091647

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCV30_RS12490
• Genome accession: NZ_AP025460
• Coordinates: 2804228..2807617 (+)
• Length: 1129 a.a.
• NCBI ID: WP_065678084.1
• Uniprot ID: A0A1C3IGZ9
• Organism: Vibrio atlanticus strain CECT 7223
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2799228..2812617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV30_RS12465	erpA	2799516..2799857 (-)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-
OCV30_RS12470	hemL	2800154..2801449 (+)	1296	WP_012604713.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCV30_RS12475	-	2801590..2801715 (-)	126	WP_004734537.1	hypothetical protein	-
OCV30_RS12480	-	2801792..2802877 (+)	1086	WP_009847558.1	AI-2E family transporter	-
OCV30_RS12485	rsmC	2802988..2804010 (+)	1023	WP_065678085.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCV30_RS12490	chiS	2804228..2807617 (+)	3390	WP_065678084.1	response regulator	Regulator
OCV30_RS12495	-	2808327..2810009 (+)	1683	WP_009847561.1	ABC transporter substrate-binding protein	-
OCV30_RS12500	-	2810179..2811165 (+)	987	WP_065678083.1	ABC transporter permease	-
OCV30_RS12505	-	2811168..2812193 (+)	1026	WP_009847563.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127245.83 Da
• Isoelectric Point: 5.2236

>NTDB_id=91647 OCV30_RS12490 WP_065678084.1 2804228..2807617(+) (chiS) [Vibrio atlanticus strain CECT 7223]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARANAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNSYLELLKRSDF
DDILLVDINGNIAYSVFKRDDYGTNLLTGKYKDANLGKTFQRLEKDVKDKRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNAQDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMLLIKSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDINKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDSS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQEELDNYSDSGSYSHFQAPDLIDNSQQENSIISEDP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRVNNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDVMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIETLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=91647 OCV30_RS12490 WP_065678084.1 2804228..2807617(+) (chiS) [Vibrio atlanticus strain CECT 7223]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGCTGGCATTTCTTGTCCTTAGTATTAC
CCCAGTAACACTTATCGCGATATTTTTCCTCCAATCGCACAGTCAGGATCTTCAGGAACAAAGTACTTCGCACCTTGTTT
CCGTCCGTGATACTAAACAGCAGCAAATTGTCGATTACCTACAAGCTCAAGAATCCCAAGTGATGGGTTTTGTTCGCTCA
GAGCTTGCCAATGCCAGTGGCGGACGATTCTATGGTTTGATCAATGCATTCCAACGCCTCGGCTTAGACATTGACGAAGC
ACGCGCTAATGCGCAGCAACGCTACATTCAAGGATCGGGCGATCAAATCAAAACATCGATTCTCCCTGAATCCAGCAGCT
TTATTGGCAGCGAGCGCTATCGTCTACTTCACAAGCGCTACCACAACTCTTATTTGGAGCTGCTTAAGCGTTCTGATTTT
GACGACATTTTATTGGTCGACATTAACGGCAACATCGCTTATTCAGTTTTTAAGCGCGATGACTACGGCACCAACTTGCT
GACAGGTAAGTACAAAGATGCAAACCTCGGCAAAACCTTTCAACGCCTGGAAAAGGACGTAAAAGACAAACGCAAATCCA
ACGAAGACTACACGCCGGTTATCGTTTCTGACTTTAAAGACGAAAATGGTAAACAGACCGCATGGTTAGGCGCACCTATC
GTTCAACAGGGCTACCTACACAGTTACGCCATGTTTAGACTACCCATCAATGGTATTACTAAGCTTATTGCCGATCTCAA
CAAGAGTTCGAATATTCAAACCTTGCTTGTCGGCGATGATCATCTGCCACGTAGCCTTGCCCATTCACAAGAGTCGATTA
ATCTGAGTTTAGATGTTGTTGATAAAGCTCTGGCAGGAGAAACGGCCGTTGGCACCTTCGACAACGCTCAGGATCAAGCG
ATCATCGCTGCATATACTCCAATTGAGCTCAAATATGCGACTTGGGCACTGGTCGTCGAGCTTCCAGAGAAAGAAGCGTT
TGCCCGTATTCATCAGTTAGAAAAGATCTTTGTGATCGTGATGTTGACGGCGATTATTCTTGTATTTGTCGCATCCCATT
ATCTGTCTAACTTCATCACATCACCGTTACTCAAGCTCACATGGGCAGCAGAGAAAGTCTCTGCGGGTGACCTTGATGAA
ACCATGATTAATACCGAACGAAAAGATGAGATAGGCCGCCTCGCGGTAAGCTTCGAAAGAATGCAACGTTCGATTCGTGA
AAAGATGCTGCTCATTAAGAGCCAAAATGATGAGCTTGAGGATAACCTTAAGACCATTCAAAAACAAAATGAAGAGTTGC
AACTGGCCAACAAACTTAAAGATGAATTCTTAGCAACAACATCACACGAATTGAGAACGCCATTACATGGCATGGTAGGT
ATCGCTGAAGCGCTAATATCTGGTGCAAACGGTCCTATTCCTGCCAACCAGAAGTACCAGTTGGATATCATCATCAATAG
TGGCCAGAGATTGGCAACACTGGTCGATGATCTACTTGATTACCACAAAATGCGCTACGGCAGTTTAGACATAAATAAAT
CTGCTGTTGATTTATCTGCTGCTACTAGCTTGGTACTAGAATTGTCTCATCATCTGTTGGGCAATAAGCCAATCCGAATT
ATTAACCAAGTACCCAGTGACTTAGGGTTGGTTTCGTCCGATCCTCAACGATTAGAACAAGTGATGTATAACTTGGTGGG
CAATGCCATCAAGTACACATCAGAAGGTAAAATTGTTATCTCAGCAAGCGTTATCGACGACAACATTCGTGTACAAGTTG
TTGATACAGGCCAAGGCATACCTGCTGAATACTTAGAACACATCTTTGAACCACTGATTCAAGCAGGACAAGACTCAAGT
AACTATCGCCAAGGTGCAGGGCTTGGGTTGTCGATAAGTCGTCAACTGATTGAACTGATGGGCGGTTCACTGTACGTAAG
TAGCCAACCAATGCTTGGCACGACGTTCAGCTTTACCCTGCCTTTAGCCACCCAAGAAGAATTGGATAACTACAGTGATT
CAGGAAGCTATTCGCACTTCCAAGCGCCAGATTTAATTGATAACAGCCAACAAGAAAATAGTATTATCAGTGAAGATCCA
GACGGTCCGTTACTGGTTATCGCCGACGATGAACCAGTAAATTTACGCGTGCTAGACAGTTTCTTGAAATTGGAAGGTTA
TCGAGTGCGCACCGCATGTGACGGCCCAGAAACCATTGAACTGATTGAGAAAGAGAAGCCAGAGTTACTTCTGCTCGATA
TTATGATGCCAGGTATGAGTGGCTATCAGGTGTGTGAAGCTCTGCGTAAGCAATACGATCATGCACAGTTGCCAATCATC
ATGCTCACTGCTCTTAATCAAGCAGAAGACCGTGTTCGTGGCTTTGAAGCTGGTGCCAACGATTACTTGTCTAAACCGTT
CAACAAACAAGAGCTGGCGGCGCGAATTACGGCTCACTTATCAGCAAGCAAAGCTGAGCAAAGACGTCTTGAGAATGATC
AGCTGCAACTAGAACTTAAACACAGGGCCATGGTTGAAGCTAACCTACTAGAAACTCAAGGGCGTTTGCTAGAGCAATTA
GAATCAGCCCCTGAGGCCATCATCTGTATTCGTGATGACCAACGAATTCGATTTGCCAACGAAGCTGCAGCAAAACTATT
TAGGCGCGGGCAAGAGCAGCTTAAACGCTCTATGGCCGATGAGATCATTGCGCCTAAATACCTTAAGGTGGAACAAGCTC
ACTACTGTGGTGATATTGATATCTATATAGACGACACTCGTCAGCGCATACCAAGTGATATCCTTAAGCTACCTGAAGGC
TCAGGGCTCGACACCATGTATATCTTTAATGTTGGTGGTGGGGTTAACTCAAACCGAGTCAATAACCTTGAAACGGCGGT
TGAGGCACTTTCAAGCTACGCCTTTGAGGGTGACAAAGATAAACTTCAACAACTGAAAGAGCTTGGTGGTGAATTTACTC
GCCTTGCAGATAAAGCAACCGGTGAAGGTAAAAACAAACAAGAGCTGATGCGTGAAGTGCTGGTCGATGTCATGACTAAT
GCCATCATCTACTGGGAGTCTGTTACAGGGGAAACCAAGTTTGCCTTCGCAGAGAAGAGTGGCTTGTGGCGCGTCTACCT
AGACCGCAGTACCCTGCAAACTAGAACGCTAGACAAATATCTACGTGTAGAAACTCTACCGAAAACGCCTCGCTGGCGAA
CGGTACTGAGCTCTATCGAGTTTATACTTGAGCACTGTAAAGAACAGACACCTGAAAGGACTCATATTGAGACCCTAAGG
GATAAGCTACAAAAACTACTGACCAGTTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• PAS domain (PAS_8) (880-914)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• HAMP domain (HAMP) (375-427)

3D structure

• AlphaFold DB: A0A1C3IGZ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	75.996	100	0.76