Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VKI21_RS11455 Genome accession   NZ_CP141255
Coordinates   2637283..2637657 (+) Length   124 a.a.
NCBI ID   WP_041922412.1    Uniprot ID   A0A844GN83
Organism   Cyanobacterium aponinum UTEX 3222     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2632283..2642657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKI21_RS11445 (VKI21_11445) - 2635584..2636111 (+) 528 WP_342596669.1 tetratricopeptide repeat protein -
  VKI21_RS11450 (VKI21_11450) thiL 2636182..2637171 (+) 990 WP_342596670.1 thiamine-phosphate kinase -
  VKI21_RS11455 (VKI21_11455) pilH 2637283..2637657 (+) 375 WP_041922412.1 response regulator Machinery gene
  VKI21_RS11460 (VKI21_11460) trmFO 2637823..2639187 (+) 1365 WP_155082782.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VKI21_RS11465 (VKI21_11465) purL 2639537..2641816 (+) 2280 WP_342596671.1 phosphoribosylformylglycinamidine synthase subunit PurL -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14118.50 Da        Isoelectric Point: 6.7140

>NTDB_id=916432 VKI21_RS11455 WP_041922412.1 2637283..2637657(+) (pilH) [Cyanobacterium aponinum UTEX 3222]
MIKILVVDDNHTPREVISEALKQFNIQVTEASNGVEATKIIEKEKFNLVITDVVMPEMNGYELCRWIKSNPGTEKVPVII
CSTKGEEFDIHWATKQGADAYIIKPFKTMELLKTIKYLLKHNVG

Nucleotide


Download         Length: 375 bp        

>NTDB_id=916432 VKI21_RS11455 WP_041922412.1 2637283..2637657(+) (pilH) [Cyanobacterium aponinum UTEX 3222]
ATGATTAAAATTTTAGTAGTCGATGATAATCACACACCCAGAGAAGTGATCAGCGAAGCACTGAAACAGTTTAATATCCA
AGTAACCGAAGCATCCAATGGGGTAGAGGCAACCAAAATAATTGAGAAAGAAAAATTTAACCTCGTAATTACTGATGTAG
TGATGCCTGAAATGAATGGCTATGAATTATGTCGCTGGATAAAAAGTAATCCAGGAACAGAAAAAGTCCCTGTAATCATT
TGCTCTACAAAAGGAGAAGAATTTGATATTCACTGGGCAACAAAACAAGGGGCGGATGCTTATATTATTAAGCCTTTTAA
AACGATGGAATTATTGAAAACCATTAAATATTTACTTAAGCATAATGTAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A844GN83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

55.372

97.581

0.54