Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VKI21_RS08630 Genome accession   NZ_CP141255
Coordinates   1948099..1949397 (+) Length   432 a.a.
NCBI ID   WP_342597819.1    Uniprot ID   -
Organism   Cyanobacterium aponinum UTEX 3222     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1943099..1954397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKI21_RS08595 (VKI21_08595) dnaJ 1943211..1944341 (-) 1131 WP_342597818.1 molecular chaperone DnaJ -
  VKI21_RS08600 (VKI21_08600) sodX 1944447..1944797 (-) 351 WP_015220036.1 nickel-type superoxide dismutase maturation protease -
  VKI21_RS08605 (VKI21_08605) sodN 1944830..1945315 (-) 486 WP_015220035.1 superoxide dismutase, Ni -
  VKI21_RS08610 (VKI21_08610) - 1945543..1946178 (+) 636 WP_015220034.1 biopolymer transporter ExbD -
  VKI21_RS08615 (VKI21_08615) purS 1946332..1946595 (+) 264 WP_015220033.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  VKI21_RS08620 (VKI21_08620) purQ 1946616..1947296 (+) 681 WP_015220032.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  VKI21_RS08625 (VKI21_08625) - 1947398..1948078 (+) 681 WP_155084101.1 uracil-DNA glycosylase family protein -
  VKI21_RS08630 (VKI21_08630) comA 1948099..1949397 (+) 1299 WP_342597819.1 phospholipase D-like domain-containing protein Machinery gene
  VKI21_RS08635 (VKI21_08635) - 1949580..1950797 (+) 1218 WP_342597820.1 zinc ribbon domain-containing protein -
  VKI21_RS08640 (VKI21_08640) - 1950850..1951686 (+) 837 WP_155084104.1 MBL fold metallo-hydrolase -
  VKI21_RS08645 (VKI21_08645) - 1951673..1952263 (-) 591 WP_324281738.1 DUF4340 domain-containing protein -
  VKI21_RS08650 (VKI21_08650) - 1952424..1954388 (+) 1965 WP_015220026.1 two-component system sensor histidine kinase NblS -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 48528.33 Da        Isoelectric Point: 7.6041

>NTDB_id=916430 VKI21_RS08630 WP_342597819.1 1948099..1949397(+) (comA) [Cyanobacterium aponinum UTEX 3222]
MLKIISFPLGIIFGLIILGGCHNSPPKLPPLAQEESIQVYFNHNQAKGKEYEEPYRKIKRFGDDLETVLIEQINSANQTI
DIAIQELNLARLARAIVEKKKQGVKIRIVTENNYNKPLNQLPNNHGLAILKRANIPIIDDTEDGSKGSGLMHHKFVIIDQ
KKVVTGSANFTLSGIHGDFDNQETRGNTNHLIVFNSQEMAKIFTQEFNYLWGDGVGKKKDSLFGLNKPERRTKIVNIGSS
SIVVKFSPNSRSTLWENSSNGIIARELAKANSSIDLALFVFSDQEIANTLEKESLAGVKIRVLIDPNFAYQYYSEGLDLL
GVAIPRKCVYENDNNPWQQPLKTVGIPALPLGDKLHHKFAIIDRYIVITGSHNWSNSANHINDETLLVIYNPLIAQHFQR
EFDYLYHDAILGVSSQLKKEIDQENSKCGLSN

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=916430 VKI21_RS08630 WP_342597819.1 1948099..1949397(+) (comA) [Cyanobacterium aponinum UTEX 3222]
ATGCTTAAAATAATTAGTTTTCCCCTAGGGATAATTTTTGGCTTAATAATATTGGGTGGTTGTCATAATTCTCCACCTAA
ATTGCCACCTTTAGCTCAAGAGGAAAGCATTCAAGTTTATTTTAATCACAATCAAGCTAAAGGGAAAGAATACGAAGAAC
CCTATCGTAAAATTAAAAGATTTGGCGATGATTTAGAAACAGTTTTAATTGAGCAAATTAACAGTGCAAATCAAACTATT
GATATAGCAATTCAAGAATTAAATTTAGCACGATTAGCAAGGGCGATTGTAGAGAAAAAAAAGCAAGGTGTAAAAATAAG
AATTGTCACGGAAAATAATTATAATAAACCTTTAAATCAGTTGCCTAATAATCATGGTTTAGCAATTTTGAAAAGAGCTA
ATATACCTATCATTGACGATACGGAAGATGGGAGTAAGGGTAGCGGTTTAATGCACCATAAATTTGTTATTATTGATCAG
AAAAAAGTTGTAACCGGATCAGCAAATTTTACTCTTAGTGGTATTCATGGAGATTTTGATAATCAAGAAACAAGGGGAAA
TACAAATCATTTAATTGTATTTAATAGTCAAGAAATGGCTAAAATTTTTACTCAAGAATTTAACTACTTATGGGGTGATG
GAGTCGGAAAAAAGAAAGATAGCTTATTTGGTTTAAATAAACCAGAAAGACGCACAAAAATAGTAAATATCGGTAGTAGT
TCTATTGTGGTAAAATTTTCTCCTAATAGTCGATCAACTCTTTGGGAAAATAGTAGTAATGGTATTATTGCTAGGGAATT
GGCAAAGGCGAATAGCTCCATCGATTTAGCGTTATTTGTTTTCAGTGATCAAGAAATAGCAAATACCCTTGAAAAAGAAT
CATTAGCGGGGGTTAAAATAAGGGTTTTAATCGATCCTAATTTTGCTTATCAATATTATAGTGAAGGGCTTGATTTATTA
GGTGTTGCAATACCAAGAAAATGTGTTTATGAGAATGATAATAATCCTTGGCAACAACCCCTAAAGACTGTTGGCATTCC
AGCTCTACCATTAGGAGATAAATTACACCATAAATTTGCTATAATCGACCGTTACATAGTTATTACAGGTTCTCATAATT
GGTCTAATTCTGCCAATCATATTAATGATGAAACTTTATTAGTTATTTATAATCCTCTAATCGCTCAACATTTTCAAAGA
GAATTTGATTATCTTTATCACGATGCAATATTAGGAGTTTCTTCGCAGTTAAAAAAGGAAATTGATCAAGAAAATTCAAA
ATGTGGGCTATCGAATTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(264-405)

PLD-like domain (PLDc_2)

(69-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

47.3

100

0.507