Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VKI22_RS12160 Genome accession   NZ_CP141254
Coordinates   2833210..2834508 (+) Length   432 a.a.
NCBI ID   WP_324281736.1    Uniprot ID   -
Organism   Cyanobacterium aponinum UTEX 3221     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2828210..2839508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKI22_RS12125 (VKI22_12125) dnaJ 2828322..2829452 (-) 1131 WP_155084098.1 molecular chaperone DnaJ -
  VKI22_RS12130 (VKI22_12130) sodX 2829558..2829908 (-) 351 WP_015220036.1 nickel-type superoxide dismutase maturation protease -
  VKI22_RS12135 (VKI22_12135) sodN 2829941..2830426 (-) 486 WP_015220035.1 superoxide dismutase, Ni -
  VKI22_RS12140 (VKI22_12140) - 2830654..2831289 (+) 636 WP_015220034.1 ExbD/TolR family protein -
  VKI22_RS12145 (VKI22_12145) purS 2831443..2831706 (+) 264 WP_015220033.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  VKI22_RS12150 (VKI22_12150) purQ 2831727..2832407 (+) 681 WP_015220032.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  VKI22_RS12155 (VKI22_12155) - 2832509..2833189 (+) 681 WP_324281735.1 uracil-DNA glycosylase family protein -
  VKI22_RS12160 (VKI22_12160) comA 2833210..2834508 (+) 1299 WP_324281736.1 phospholipase D-like domain-containing protein Machinery gene
  VKI22_RS12165 (VKI22_12165) - 2834684..2835901 (+) 1218 WP_155084103.1 zinc ribbon domain-containing protein -
  VKI22_RS12170 (VKI22_12170) - 2835966..2836802 (+) 837 WP_324281737.1 MBL fold metallo-hydrolase -
  VKI22_RS12175 (VKI22_12175) - 2836789..2837379 (-) 591 WP_324281738.1 DUF4340 domain-containing protein -
  VKI22_RS12180 (VKI22_12180) nblS 2837540..2839504 (+) 1965 WP_015220026.1 two-component system sensor histidine kinase NblS -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 48529.32 Da        Isoelectric Point: 7.3464

>NTDB_id=916413 VKI22_RS12160 WP_324281736.1 2833210..2834508(+) (comA) [Cyanobacterium aponinum UTEX 3221]
MLKIISFPLGIIFGLIILGGCHNSPPKLPPLAQEESIQVYFNHNQAKGKEYEEPYRKIKRFGDDLETVLIEQINSANQTI
DIAIQELNLARLARAIVEKKKQGVKIRIVTENNYNKPLNQLPNNHGLAILKRANIPIIDDTEDGSKGSGLMHHKFVIIDQ
KKVVTGSANFTLSGIHGDFDNQETRGNTNHLIVFNSQEMAKIFTQEFNYLWGDGVGKKKDSLFGLNKPERRTKIVNIGSS
SIVVKFSPNSRSTLWENSSNGIIARELAKANSSIDLALFVFSDQEIANTLEKESLAGVKIRVLIDPNFAYQYYSEGLDLL
GVAIPRKCVYENDNNPWQQPLKTVGIPALPLGDKLHHKFAIIDRYIVITGSHNWSNSANHINDETLLVIYNPLIAQHFQR
EFDYLYHDAILGVSSELKKEIDQENSKCGLSN

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=916413 VKI22_RS12160 WP_324281736.1 2833210..2834508(+) (comA) [Cyanobacterium aponinum UTEX 3221]
ATGCTTAAAATAATTAGTTTTCCCCTAGGGATAATTTTTGGCTTAATAATATTGGGTGGTTGTCATAATTCTCCACCTAA
ATTGCCACCTTTAGCTCAAGAGGAAAGCATTCAAGTTTATTTTAATCACAATCAAGCTAAAGGGAAAGAATACGAAGAAC
CCTATCGTAAAATTAAAAGATTTGGCGATGATTTAGAAACAGTTTTAATTGAGCAAATTAACAGTGCAAATCAAACTATT
GATATAGCAATTCAAGAATTAAATTTAGCACGATTAGCAAGGGCGATTGTAGAGAAAAAAAAGCAAGGTGTAAAAATAAG
AATTGTCACAGAAAATAATTATAATAAACCTTTAAATCAGTTGCCTAATAATCATGGTTTAGCAATTTTGAAAAGAGCTA
ATATACCTATCATTGACGATACGGAAGATGGGAGTAAGGGTAGCGGTTTAATGCACCATAAATTTGTTATTATTGATCAG
AAAAAAGTTGTAACCGGATCAGCAAATTTTACTCTTAGTGGTATTCATGGAGATTTTGATAATCAAGAAACAAGGGGAAA
TACAAATCATTTAATTGTATTTAATAGTCAAGAAATGGCTAAAATTTTTACTCAAGAATTTAACTACTTATGGGGTGATG
GAGTCGGAAAAAAGAAAGATAGCTTATTTGGTTTAAATAAACCAGAAAGACGCACAAAAATAGTAAATATCGGTAGTAGT
TCTATTGTGGTAAAATTTTCTCCTAATAGTCGATCAACTCTTTGGGAAAATAGTAGTAATGGTATTATTGCTAGGGAATT
GGCAAAGGCGAATAGCTCCATCGATTTAGCGTTATTTGTTTTCAGTGATCAAGAAATAGCAAATACCCTTGAAAAAGAAT
CATTAGCGGGGGTTAAAATAAGGGTTTTAATCGATCCTAATTTTGCTTATCAATATTATAGTGAAGGGCTTGATTTATTA
GGTGTTGCAATACCAAGAAAATGTGTTTATGAGAATGATAATAATCCTTGGCAACAACCCCTAAAGACTGTTGGCATTCC
AGCTCTACCATTAGGAGATAAATTACACCATAAATTTGCTATAATCGACCGTTACATAGTTATTACAGGTTCTCATAATT
GGTCTAATTCTGCCAATCATATTAATGATGAAACTTTATTAGTTATTTATAATCCTCTAATCGCTCAACATTTTCAAAGA
GAATTTGATTATCTTTATCACGATGCAATATTAGGAGTTTCTTCGGAGTTAAAAAAGGAAATTGATCAAGAAAATTCAAA
ATGTGGGCTATCGAATTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(264-405)

PLD-like domain (PLDc_2)

(69-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

47.3

100

0.507